Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLNCDO700_RS09625 Genome accession   NZ_CP069179
Coordinates   1896741..1897724 (-) Length   327 a.a.
NCBI ID   WP_046124440.1    Uniprot ID   -
Organism   Lactococcus cremoris strain NCDO700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1891741..1902724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO700_RS09610 (LLNCDO700_09580) - 1893094..1894020 (-) 927 WP_011835658.1 peptidyl-prolyl cis-trans isomerase -
  LLNCDO700_RS09615 (LLNCDO700_09585) - 1894166..1894858 (-) 693 WP_011835659.1 O-methyltransferase -
  LLNCDO700_RS09620 (LLNCDO700_09590) pepF 1894861..1896666 (-) 1806 WP_259692151.1 oligoendopeptidase F Regulator
  LLNCDO700_RS09625 (LLNCDO700_09595) coiA 1896741..1897724 (-) 984 WP_046124440.1 competence protein CoiA Machinery gene
  LLNCDO700_RS09630 (LLNCDO700_09600) - 1897799..1898884 (-) 1086 WP_014735114.1 YdcF family protein -
  LLNCDO700_RS09635 (LLNCDO700_09605) - 1899037..1899885 (-) 849 WP_011835662.1 alpha/beta hydrolase -
  LLNCDO700_RS09640 (LLNCDO700_09610) - 1900094..1901515 (-) 1422 WP_011676727.1 NCS2 family permease -
  LLNCDO700_RS09645 (LLNCDO700_09615) - 1901822..1902658 (+) 837 WP_011835663.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39152.77 Da        Isoelectric Point: 9.7630

>NTDB_id=532743 LLNCDO700_RS09625 WP_046124440.1 1896741..1897724(-) (coiA) [Lactococcus cremoris strain NCDO700]
MLTAIDENNKIINLLELDRKELTGKFYCPSCHSELLIKNGQIKVLHFAHKSLKSCNLWLENESDQHLGLKKILYQWFKKT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTELQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDSKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLENFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPRFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=532743 LLNCDO700_RS09625 WP_046124440.1 1896741..1897724(-) (coiA) [Lactococcus cremoris strain NCDO700]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGACCGCAAAGAATTGACCGGAAAATTTTA
TTGTCCTTCTTGTCATTCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGACCAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAAGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGTCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAGAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGTGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCTCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATTCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAATTTTACTGACGAAATGACAATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCCGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

98.471

100

0.985
  coiA Streptococcus mitis NCTC 12261

44.72

98.471

0.44
  coiA Streptococcus pneumoniae TIGR4

43.21

99.083

0.428
  coiA Streptococcus pneumoniae Rx1

43.21

99.083

0.428
  coiA Streptococcus pneumoniae D39

43.21

99.083

0.428
  coiA Streptococcus pneumoniae R6

43.21

99.083

0.428