Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LLNCDO700_RS09620 Genome accession   NZ_CP069179
Coordinates   1894861..1896666 (-) Length   601 a.a.
NCBI ID   WP_259692151.1    Uniprot ID   -
Organism   Lactococcus cremoris strain NCDO700     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1889861..1901666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO700_RS09605 (LLNCDO700_09575) alaS 1890213..1892831 (-) 2619 WP_259687311.1 alanine--tRNA ligase -
  LLNCDO700_RS09610 (LLNCDO700_09580) - 1893094..1894020 (-) 927 WP_011835658.1 peptidyl-prolyl cis-trans isomerase -
  LLNCDO700_RS09615 (LLNCDO700_09585) - 1894166..1894858 (-) 693 WP_011835659.1 O-methyltransferase -
  LLNCDO700_RS09620 (LLNCDO700_09590) pepF 1894861..1896666 (-) 1806 WP_259692151.1 oligoendopeptidase F Regulator
  LLNCDO700_RS09625 (LLNCDO700_09595) coiA 1896741..1897724 (-) 984 WP_046124440.1 competence protein CoiA Machinery gene
  LLNCDO700_RS09630 (LLNCDO700_09600) - 1897799..1898884 (-) 1086 WP_014735114.1 YdcF family protein -
  LLNCDO700_RS09635 (LLNCDO700_09605) - 1899037..1899885 (-) 849 WP_011835662.1 alpha/beta hydrolase -
  LLNCDO700_RS09640 (LLNCDO700_09610) - 1900094..1901515 (-) 1422 WP_011676727.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70030.82 Da        Isoelectric Point: 4.8820

>NTDB_id=532742 LLNCDO700_RS09620 WP_259692151.1 1894861..1896666(-) (pepF) [Lactococcus cremoris strain NCDO700]
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEKWLETLQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILEISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSILSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWAKIPHFYYNFYVFQYATGFAAASFLAEKVVHGSVTDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=532742 LLNCDO700_RS09620 WP_259692151.1 1894861..1896666(-) (pepF) [Lactococcus cremoris strain NCDO700]
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACAACAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAAGGTAAAAAAAGAGCTTTCACTTGTTGAGACAAATGATAAAGGTCATTTACTTGATTCAGCAGAAA
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCCCTCTATGTTAATTTTGGGGAAAGCTA
TGCCTTTTATGAACCTGAATTTTTAAAAATTACAAAAGAAACCTACGAAAAATGGTTAGAAACCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGTTAAAAA
TGAATTGGGTGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGGGAAGTAAGAAAAG
CGGCTTATGAAGCACTTTACAGCAATTATGAACAATATCAACATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTCAATGCCCAAATACGCGCATATGACTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAGAAAATCTTAG
AAATTTCTGATTTCAAAATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTCATGTTACTCA
ATTGGCAAGGAACATTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCTCAGCACTTTTACGAGGGAA
AATCAGCCTTATGTTTATGGGGATTACCCAATCTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGTAATGATGAAAAGGAACGTTTTGCTCTTTTAAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTGTTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAAACCCTGAAATTCAGTTTGA
ATGGGCAAAAATTCCTCATTTCTATTATAATTTTTACGTTTTTCAATATGCAACTGGCTTTGCCGCAGCCTCATTTCTAG
CTGAAAAAGTGGTGCATGGTTCGGTTACTGACCGTCAAAATTATCTTGATTATTTAAAAGCTGGTTCGTCAGCCTACCCA
CTAGACGTGATTGCAAAAGCTGGAGTCAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(113-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.561

100

0.636