Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K9U07_RS11915 Genome accession   NZ_CP083512
Coordinates   2443855..2444979 (-) Length   374 a.a.
NCBI ID   WP_000228562.1    Uniprot ID   -
Organism   Escherichia coli strain elppa4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2438855..2449979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U07_RS11885 (K9U07_11915) yrdA 2440655..2441209 (+) 555 WP_001286216.1 gamma carbonic anhydrase family protein -
  K9U07_RS11890 (K9U07_11920) yrdB 2441185..2441442 (-) 258 WP_001070567.1 DUF1488 domain-containing protein -
  K9U07_RS11895 (K9U07_11925) aroE 2441439..2442257 (-) 819 WP_000451231.1 shikimate dehydrogenase -
  K9U07_RS11900 (K9U07_11930) tsaC 2442262..2442834 (-) 573 WP_001366671.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  K9U07_RS11905 (K9U07_11935) yrdD 2442839..2443381 (-) 543 WP_001129723.1 type I DNA topoisomerase -
  K9U07_RS11910 (K9U07_11940) smg 2443410..2443883 (-) 474 WP_000460672.1 DUF494 family protein Smg -
  K9U07_RS11915 (K9U07_11945) dprA 2443855..2444979 (-) 1125 WP_000228562.1 DNA-protecting protein DprA Machinery gene
  K9U07_RS11920 (K9U07_11950) def 2445109..2445618 (+) 510 WP_000114984.1 peptide deformylase -
  K9U07_RS11925 (K9U07_11955) fmt 2445633..2446580 (+) 948 WP_000004443.1 methionyl-tRNA formyltransferase -
  K9U07_RS11930 (K9U07_11960) rsmB 2446626..2447915 (+) 1290 WP_001469469.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  K9U07_RS11935 (K9U07_11965) trkA 2447937..2449313 (+) 1377 WP_228587471.1 Trk system potassium transporter TrkA -
  K9U07_RS11940 (K9U07_11970) mscL 2449443..2449853 (+) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40975.98 Da        Isoelectric Point: 6.4377

>NTDB_id=532660 K9U07_RS11915 WP_000228562.1 2443855..2444979(-) (dprA) [Escherichia coli strain elppa4]
MVDTEIWLRLMSISSLYGDNMVRIAHWLAKQSYIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVAGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=532660 K9U07_RS11915 WP_000228562.1 2443855..2444979(-) (dprA) [Escherichia coli strain elppa4]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATAATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGTATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGCAGGAGAACTGCACGCGTTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCGCGTCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCTCTTGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTTTAAGTAAAGGTGTACTAGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGACCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

48.71

82.888

0.404
  dprA Vibrio cholerae strain A1552

48.71

82.888

0.404
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Haemophilus influenzae Rd KW20

43.917

90.107

0.396
  dprA Legionella pneumophila strain ERS1305867

44.377

87.968

0.39