Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JNO51_RS13910 Genome accession   NZ_CP069163
Coordinates   2921500..2923002 (-) Length   500 a.a.
NCBI ID   WP_215778346.1    Uniprot ID   -
Organism   Paludibacterium sp. B53371     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2916500..2928002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO51_RS13885 purB 2917435..2918805 (+) 1371 WP_215778337.1 adenylosuccinate lyase -
  JNO51_RS13895 - 2919154..2919975 (-) 822 WP_215778339.1 undecaprenyl-diphosphate phosphatase -
  JNO51_RS13900 - 2920035..2920652 (-) 618 WP_215778341.1 thiol:disulfide interchange protein DsbA/DsbL -
  JNO51_RS13905 - 2920715..2921428 (-) 714 WP_252346091.1 SPOR domain-containing protein -
  JNO51_RS13910 comM 2921500..2923002 (-) 1503 WP_215778346.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JNO51_RS13915 - 2923011..2923271 (-) 261 WP_215778348.1 accessory factor UbiK family protein -
  JNO51_RS13920 glnK 2923629..2923967 (+) 339 WP_133679525.1 P-II family nitrogen regulator -
  JNO51_RS13925 - 2923991..2925301 (+) 1311 WP_215778350.1 ammonium transporter -
  JNO51_RS13930 - 2925413..2925859 (-) 447 WP_215778352.1 ClpXP protease specificity-enhancing factor -
  JNO51_RS13935 - 2925869..2926471 (-) 603 WP_215778355.1 glutathione S-transferase N-terminal domain-containing protein -
  JNO51_RS13940 - 2926626..2927381 (-) 756 WP_215778357.1 cytochrome c1 -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53057.47 Da        Isoelectric Point: 8.1690

>NTDB_id=532600 JNO51_RS13910 WP_215778346.1 2921500..2923002(-) (comM) [Paludibacterium sp. B53371]
MKLAVVHSRALDGADAPDVEVEVHLSAGLPAFHIVGLPDTEVKESRDRVRSAIQTSGFEFPASKIIVSLAPADLPKASGR
FDLPIALGILAASGQLLAAPLARHEFAGELGLSGQLRPVRGALAMACHAARAERCLVLPTASAAEAALVPGVQVLQADSL
LQVCAHLNGVQALSIAEAKSPPCGRLLPDLAEVRGQGVARHALELAAAGGHSLLMIGAPGCGKSMLAARLPGILPVMSEA
EALECAALHSLSSQGFDPADWRQRPFRAPHHGSSVAALVGGGSVPRPGEITLAHHGVLFLDEMPEFERRALEALREPMET
GVVHLARAARRFSFPARFQLVAAMNPCPCGYAGDVSGRCLCSPEQISRYRGKISGPLLDRIDMQVEMAGHTPAELLQNGP
GEGSALVLQRVQMARERQLHRQGKVNAFLTAGELERYCRVETGLLEFLAELLGRLHLSARALHRTLRLALTLADLAGLAK
VGRAQVLQAVQLRRQTFARQ

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=532600 JNO51_RS13910 WP_215778346.1 2921500..2923002(-) (comM) [Paludibacterium sp. B53371]
ATGAAGCTCGCCGTGGTGCATAGTCGGGCGCTGGATGGTGCGGATGCGCCCGACGTGGAAGTGGAAGTGCATCTTTCAGC
GGGGTTGCCCGCTTTTCATATCGTTGGTTTGCCTGATACCGAGGTCAAGGAGAGTCGCGACAGGGTCCGCAGCGCGATTC
AGACCTCCGGCTTTGAATTTCCCGCCAGCAAGATCATCGTCAGCCTGGCGCCGGCTGACCTGCCCAAGGCCTCCGGCCGT
TTCGATCTGCCGATTGCGCTGGGCATCCTGGCCGCTTCCGGCCAACTGCTGGCAGCGCCACTTGCCCGGCATGAGTTCGC
CGGCGAGCTGGGGCTGTCCGGGCAGTTGCGGCCGGTGCGCGGTGCGCTGGCGATGGCCTGTCATGCGGCCCGTGCTGAAC
GTTGCCTGGTGCTGCCCACGGCCAGTGCGGCCGAGGCGGCGCTGGTGCCCGGCGTGCAGGTTTTGCAGGCAGACAGCCTG
CTGCAGGTCTGTGCGCATCTCAATGGTGTGCAGGCGCTGAGTATCGCCGAGGCGAAGTCTCCGCCGTGTGGTCGTTTGCT
GCCGGATCTTGCCGAGGTGCGCGGGCAGGGCGTTGCCCGTCATGCTCTCGAACTGGCGGCGGCTGGGGGCCACAGCCTGC
TGATGATCGGGGCGCCGGGCTGTGGCAAGAGCATGCTGGCGGCGCGTCTGCCCGGTATTCTGCCCGTGATGAGCGAAGCG
GAGGCGCTGGAGTGTGCTGCGCTGCATTCCCTCAGCTCGCAGGGCTTCGATCCGGCGGACTGGCGCCAGCGTCCCTTTCG
CGCCCCGCATCATGGCAGTTCGGTCGCGGCGCTGGTGGGGGGCGGCAGCGTGCCCAGACCGGGGGAAATCACGCTGGCGC
ATCATGGGGTGCTGTTCCTGGATGAAATGCCCGAGTTCGAACGACGGGCTCTGGAGGCGCTGCGCGAGCCCATGGAGACC
GGGGTGGTCCATCTGGCGCGCGCCGCACGCCGTTTCTCCTTCCCGGCCCGTTTTCAGCTGGTGGCGGCCATGAATCCCTG
CCCCTGTGGCTATGCCGGGGATGTCTCGGGAAGATGTCTGTGTTCGCCTGAGCAAATTTCGCGTTATCGCGGTAAAATCT
CCGGCCCCCTGCTGGATCGTATCGACATGCAGGTGGAAATGGCGGGGCACACGCCTGCCGAGCTGTTGCAAAACGGCCCG
GGAGAAGGGTCCGCCCTCGTGCTGCAGCGTGTGCAGATGGCGCGTGAGCGTCAACTGCATCGCCAGGGCAAGGTGAATGC
TTTTTTGACGGCAGGTGAACTTGAGCGCTATTGCCGTGTCGAAACCGGTTTGCTTGAGTTTCTTGCTGAGTTGTTGGGGC
GACTGCATCTGTCTGCACGCGCCTTGCATCGAACCTTGCGTCTGGCGCTGACCCTGGCCGATCTGGCCGGGTTGGCAAAG
GTTGGTCGCGCGCAGGTGTTGCAGGCCGTGCAACTGAGGAGGCAGACCTTCGCGCGGCAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.924

99.4

0.536
  comM Vibrio campbellii strain DS40M4

51.807

99.6

0.516
  comM Haemophilus influenzae Rd KW20

48.6

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.207

100

0.484
  comM Legionella pneumophila str. Paris

48.207

100

0.484
  comM Glaesserella parasuis strain SC1401

47.2

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.153

100

0.414