Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JNO49_RS19800 Genome accession   NZ_CP069162
Coordinates   4227314..4228378 (+) Length   354 a.a.
NCBI ID   WP_028536785.1    Uniprot ID   -
Organism   Paludibacterium yongneupense strain BCRC 80531     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4222314..4233378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO49_RS19775 - 4222880..4223446 (-) 567 WP_246542694.1 DUF4390 domain-containing protein -
  JNO49_RS19780 rsmB 4223433..4224674 (-) 1242 WP_028536789.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JNO49_RS19785 htpX 4224790..4225647 (-) 858 WP_028536788.1 zinc metalloprotease HtpX -
  JNO49_RS19790 fmt 4225689..4226609 (-) 921 WP_028536787.1 methionyl-tRNA formyltransferase -
  JNO49_RS19795 def 4226636..4227139 (-) 504 WP_028536786.1 peptide deformylase -
  JNO49_RS19800 dprA 4227314..4228378 (+) 1065 WP_028536785.1 DNA-processing protein DprA Machinery gene
  JNO49_RS19805 - 4228420..4228878 (+) 459 WP_028536784.1 DUF494 domain-containing protein -
  JNO49_RS19810 topA 4229029..4231317 (+) 2289 WP_028536783.1 type I DNA topoisomerase -
  JNO49_RS19815 - 4231592..4231954 (+) 363 WP_246542695.1 hypothetical protein -
  JNO49_RS19820 - 4231965..4232339 (-) 375 WP_028536781.1 diacylglycerol kinase -
  JNO49_RS19825 gshB 4232381..4233325 (-) 945 WP_028536780.1 glutathione synthase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 36954.64 Da        Isoelectric Point: 6.8355

>NTDB_id=532584 JNO49_RS19800 WP_028536785.1 4227314..4228378(+) (dprA) [Paludibacterium yongneupense strain BCRC 80531]
MKQIDPDWLRLALAPGVGPRLFLDLIRFFGSAQAVVAAPRRELENRLPPAAIDALVARAADAAVEAALEWATRPGCRLLT
LLDAEYPTPLAEAPGAPPLLFARGRCELLASPMLAVVGSRHPTPQGRSTARDFAAGLAASGYTVVSGLAHGIDSAAHEGA
LGSQASTVAVVGTGIDRVYPAANRDLAHRIAAQGLILSEFPLGSPPLAAHFPRRNRIIAGLGRACLVVEAGIASGSLITA
RYALEAGREVMALPGSIHNPQARGCHRLLKEGARLVESLDDIIDEVGQAGFPAASESAVETPPLLAAMGFDPVSADQLAP
KLGLTAPKLYEMLLGLELEGRVASLPGGRFQRLF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=532584 JNO49_RS19800 WP_028536785.1 4227314..4228378(+) (dprA) [Paludibacterium yongneupense strain BCRC 80531]
ATGAAGCAAATCGATCCCGACTGGCTGCGCCTCGCGCTCGCCCCCGGCGTCGGGCCGCGCCTGTTTCTCGACCTGATCCG
GTTTTTCGGATCGGCGCAGGCCGTCGTCGCCGCCCCGCGGCGCGAGCTGGAAAACCGCCTGCCGCCCGCCGCCATCGACG
CGCTGGTCGCGCGCGCCGCAGACGCGGCAGTCGAAGCCGCTCTCGAATGGGCCACCCGCCCTGGCTGCCGTCTGCTGACC
CTTCTGGACGCAGAGTATCCGACACCGCTGGCCGAGGCGCCAGGGGCTCCGCCGCTATTGTTCGCCCGAGGCCGCTGCGA
ACTTCTGGCCTCGCCCATGCTGGCCGTGGTCGGCAGCCGCCACCCGACGCCACAAGGCCGGTCCACGGCCCGCGACTTCG
CCGCCGGCCTCGCCGCCAGCGGCTACACCGTGGTCAGCGGTCTCGCCCACGGAATAGACAGCGCGGCCCACGAGGGCGCC
CTCGGCAGCCAGGCGTCGACCGTGGCCGTGGTCGGCACCGGCATCGACCGGGTCTATCCGGCGGCCAACCGCGACCTCGC
ACACCGCATCGCCGCACAAGGGCTGATTCTGTCCGAATTCCCCCTGGGCAGCCCGCCGCTGGCCGCACATTTTCCACGGC
GCAACCGTATTATCGCCGGTCTGGGGCGCGCCTGCCTCGTCGTCGAAGCCGGTATCGCGTCCGGTTCGCTGATCACCGCG
CGCTACGCGCTGGAGGCCGGGCGCGAAGTCATGGCCTTGCCCGGCTCCATCCACAACCCCCAGGCTCGCGGCTGCCACCG
TTTACTCAAGGAGGGCGCCCGGCTGGTCGAGAGCCTGGACGACATTATCGATGAAGTCGGCCAGGCCGGCTTCCCGGCCG
CCAGCGAATCGGCCGTCGAAACGCCCCCCCTGCTCGCCGCCATGGGCTTCGACCCGGTCAGCGCCGACCAGTTGGCGCCC
AAGCTCGGGTTGACGGCGCCCAAGCTTTACGAGATGCTTCTCGGGCTTGAACTGGAAGGCCGGGTGGCAAGCCTGCCGGG
CGGTCGTTTCCAGCGCCTGTTCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(293-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

48.052

100

0.523
  dprA Neisseria meningitidis MC58

47.545

100

0.52
  dprA Neisseria meningitidis strain C311

47.545

100

0.52
  dprA Neisseria gonorrhoeae MS11

47.273

100

0.514
  dprA Vibrio cholerae strain A1552

41.551

100

0.424
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.336

100

0.407
  dprA Vibrio campbellii strain DS40M4

39.216

100

0.395
  dprA Legionella pneumophila strain ERS1305867

40.176

96.328

0.387
  dprA Acinetobacter baylyi ADP1

37.43

100

0.379