Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JNO49_RS03275 Genome accession   NZ_CP069162
Coordinates   727997..729487 (+) Length   496 a.a.
NCBI ID   WP_028537184.1    Uniprot ID   -
Organism   Paludibacterium yongneupense strain BCRC 80531     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 722997..734487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO49_RS03250 - 723211..723651 (+) 441 WP_028537189.1 ClpXP protease specificity-enhancing factor -
  JNO49_RS03255 - 723875..725299 (+) 1425 WP_028537188.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  JNO49_RS03260 - 725634..726947 (-) 1314 WP_028537187.1 ammonium transporter -
  JNO49_RS03265 glnK 726970..727308 (-) 339 WP_028537186.1 P-II family nitrogen regulator -
  JNO49_RS03270 - 727553..727840 (+) 288 WP_028537185.1 accessory factor UbiK family protein -
  JNO49_RS03275 comM 727997..729487 (+) 1491 WP_028537184.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JNO49_RS03280 - 729453..730382 (-) 930 WP_051229544.1 LysR family transcriptional regulator -
  JNO49_RS03285 - 730555..731955 (+) 1401 WP_028537183.1 MFS transporter -
  JNO49_RS03290 - 731967..733130 (-) 1164 WP_028537182.1 porin -
  JNO49_RS03295 - 733475..734185 (+) 711 WP_051229542.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52005.12 Da        Isoelectric Point: 8.6357

>NTDB_id=532567 JNO49_RS03275 WP_028537184.1 727997..729487(+) (comM) [Paludibacterium yongneupense strain BCRC 80531]
MRLATVHSRALSGGSAPEVAVEAHLANGLPSFNIVGLPDAGVRESRDRVRSAILSSGFEFPLGRLVVNLAPADLPKESGR
FDLPIALGILAASGQLPAKALEGYEFAGELALGGGLRPVRGAVAMVWEARCGGRIFVLPAASAGEAAVIEGIALLAADNL
GAVCAHLAGRAHLPAPLSPAVLPAARVFDLADVKGQALARLALEVVAAGGHSLLLVGPPGAGKSMLAQRLPGLLPLLDDV
EAQASAALLSLSVAGFSPGEWRRRPFRSPHHSASAAAMVGGGSVLQPGEISLAHQGILFLDELPEFDRRVLEALREPLEC
GEIHIARAGQRAVFPARFQLVAAMNPCPCGFRGQAAGRCRCSPEQLARYRGRLSGPLLDRIDVQIEVPALTAQELASVEA
GENSAAVAARVLAARKLQFARQGKINAFLSGAELERDGRIDADASHLLLDLFERLGLSARSFHRVLRVARTLADLQAATR
VERAHVMQAVQLRRAL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=532567 JNO49_RS03275 WP_028537184.1 727997..729487(+) (comM) [Paludibacterium yongneupense strain BCRC 80531]
GTGAGATTGGCCACGGTGCACAGCCGGGCCCTGTCCGGCGGCAGCGCGCCGGAGGTGGCGGTCGAGGCACATCTGGCCAA
CGGTTTGCCCAGCTTCAATATCGTGGGTCTGCCCGATGCCGGCGTCAGGGAGAGTCGCGATCGAGTGCGCTCCGCCATTC
TCAGTTCCGGTTTCGAGTTCCCTCTCGGGCGTCTGGTTGTCAATCTGGCGCCCGCCGATCTACCCAAAGAGTCCGGTCGT
TTCGATCTGCCTATCGCGTTGGGTATTTTGGCCGCTTCCGGACAGTTACCGGCCAAGGCGCTGGAAGGCTACGAGTTTGC
CGGCGAACTCGCGCTCGGCGGCGGGCTGCGGCCGGTGCGCGGTGCCGTGGCCATGGTCTGGGAAGCGCGTTGCGGCGGTC
GCATTTTTGTCCTGCCTGCCGCCAGTGCGGGCGAAGCCGCCGTGATCGAGGGAATCGCTTTGCTGGCCGCCGATAATCTC
GGTGCGGTGTGCGCCCACCTTGCCGGTCGTGCGCACTTGCCTGCGCCGCTTTCTCCAGCGGTGCTGCCCGCGGCCAGGGT
TTTCGACCTGGCCGATGTCAAAGGCCAGGCGCTGGCGCGGCTGGCGCTCGAAGTCGTCGCCGCGGGCGGACACAGCCTGC
TGCTGGTCGGCCCGCCCGGGGCTGGCAAGTCGATGCTCGCGCAGCGCCTGCCGGGCCTGCTGCCGCTGCTGGACGATGTT
GAGGCGCAGGCAAGCGCTGCCCTGCTGTCGCTTTCCGTCGCCGGCTTCTCTCCGGGCGAGTGGCGGCGCAGACCTTTCCG
TTCGCCGCATCATTCCGCTTCCGCCGCTGCCATGGTCGGCGGCGGCAGCGTGCTGCAACCTGGCGAGATCAGCCTCGCGC
ATCAGGGGATTCTCTTTCTCGACGAGTTGCCCGAGTTCGATCGCAGGGTACTGGAAGCCTTGCGCGAGCCGCTGGAGTGT
GGCGAGATTCATATCGCGCGCGCCGGGCAACGCGCTGTTTTCCCCGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
CCCCTGCGGTTTTCGAGGTCAGGCAGCCGGCCGCTGCCGCTGCTCGCCCGAGCAGTTGGCCCGTTACCGCGGACGACTGT
CCGGCCCGCTGCTTGACCGTATCGACGTGCAGATCGAGGTGCCGGCGTTGACGGCACAGGAACTGGCTTCGGTCGAGGCC
GGCGAGAACAGCGCGGCCGTTGCCGCCCGTGTCCTTGCCGCCCGAAAGCTGCAGTTCGCCCGCCAGGGCAAGATCAACGC
CTTTCTCAGCGGGGCCGAACTGGAGCGCGACGGTCGCATCGATGCCGACGCCAGCCATCTGCTGCTGGATCTTTTCGAGC
GCCTTGGCCTGTCGGCGCGTTCTTTCCACCGTGTGTTGCGGGTTGCACGCACGCTGGCCGATTTACAGGCCGCCACACGC
GTCGAACGCGCGCATGTCATGCAGGCGGTGCAACTGCGTCGTGCGCTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.909

99.798

0.508
  comM Vibrio campbellii strain DS40M4

50.707

99.798

0.506
  comM Haemophilus influenzae Rd KW20

48.898

100

0.492
  comM Glaesserella parasuis strain SC1401

48

100

0.484
  comM Legionella pneumophila str. Paris

46.307

100

0.468
  comM Legionella pneumophila strain ERS1305867

46.307

100

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.7

100

0.425