Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JM656_RS20140 Genome accession   NZ_CP069159
Coordinates   4278865..4279395 (-) Length   176 a.a.
NCBI ID   WP_192613760.1    Uniprot ID   -
Organism   Citrobacter sp. R56     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4273865..4284395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM656_RS20115 (JM656_20115) - 4274233..4274901 (-) 669 WP_203359278.1 glutathione S-transferase family protein -
  JM656_RS20120 (JM656_20120) soxR 4275259..4275717 (-) 459 WP_203359279.1 redox-sensitive transcriptional activator SoxR -
  JM656_RS20125 (JM656_20125) soxS 4275804..4276127 (+) 324 WP_162381798.1 superoxide response transcriptional regulator SoxS -
  JM656_RS20130 (JM656_20130) - 4276130..4277716 (-) 1587 WP_203359280.1 EAL domain-containing protein -
  JM656_RS20135 (JM656_20135) - 4278478..4278759 (+) 282 WP_192613759.1 YjcB family protein -
  JM656_RS20140 (JM656_20140) ssb 4278865..4279395 (-) 531 WP_192613760.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JM656_RS20145 (JM656_20145) uvrA 4279646..4282468 (+) 2823 WP_203359281.1 excinuclease ABC subunit UvrA -
  JM656_RS20150 (JM656_20150) - 4282530..4282880 (-) 351 WP_192613762.1 MmcQ/YjbR family DNA-binding protein -
  JM656_RS20155 (JM656_20155) aphA 4283021..4283734 (-) 714 WP_203359282.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18765.79 Da        Isoelectric Point: 5.2456

>NTDB_id=532535 JM656_RS20140 WP_192613760.1 4278865..4279395(-) (ssb) [Citrobacter sp. R56]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGSAGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=532535 JM656_RS20140 WP_192613760.1 4278865..4279395(-) (ssb) [Citrobacter sp. R56]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGCGAATACCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAATACACGACGGAAGTGGTGGTTAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGTGCTCCGGCAGGCGGTAGTGCAGGTGGTCAGCAGCAGGGTG
GTTGGGGTCAGCCTCAGCAGCCTCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCTGCACCA
GCGCCGTCTAACGAACCGCCGATGGATTTCGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.302

100

0.756
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.597
  ssb Neisseria meningitidis MC58

45.81

100

0.466
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

100

0.381