Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LAJ61_RS08085 Genome accession   NZ_CP083409
Coordinates   1831577..1833907 (+) Length   776 a.a.
NCBI ID   WP_224053505.1    Uniprot ID   -
Organism   Moraxella osloensis strain FLMOS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1826577..1838907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ61_RS08065 (LAJ61_08045) pilM 1828552..1829604 (+) 1053 WP_224053501.1 pilus assembly protein PilM Machinery gene
  LAJ61_RS08070 (LAJ61_08050) pilN 1829604..1830275 (+) 672 WP_224053502.1 PilN domain-containing protein Machinery gene
  LAJ61_RS08075 (LAJ61_08055) comO/pilO 1830278..1831039 (+) 762 WP_224053503.1 type 4a pilus biogenesis protein PilO Machinery gene
  LAJ61_RS08080 (LAJ61_08060) comL/pilP 1831026..1831559 (+) 534 WP_224053504.1 pilus assembly protein PilP Machinery gene
  LAJ61_RS08085 (LAJ61_08065) pilQ 1831577..1833907 (+) 2331 WP_224053505.1 type IV pilus secretin family protein Machinery gene
  LAJ61_RS08090 (LAJ61_08070) - 1834015..1834551 (+) 537 WP_160002372.1 shikimate kinase -
  LAJ61_RS08095 (LAJ61_08075) aroB 1834620..1835717 (+) 1098 WP_224053506.1 3-dehydroquinate synthase -
  LAJ61_RS08100 (LAJ61_08080) - 1835787..1836770 (+) 984 WP_224053507.1 hypothetical protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 83616.21 Da        Isoelectric Point: 6.0726

>NTDB_id=532113 LAJ61_RS08085 WP_224053505.1 1831577..1833907(+) (pilQ) [Moraxella osloensis strain FLMOS1]
MNFNAYPFRTSTSKLAVAMSAMLVSSSVFAADTIRNISVTTPSAVLTELNIDFANSAVTPTAYELASPTRLVLDFPNVNN
QISSRMQTYNQGYVNNVTTLTNDSMTRMIIELSNQATYSTRVVNNRLVVSMQPKGSTPAVTTVATNPAIVTPVVTTPVVV
SQPAVVAPAVVVTEPVPVIVTPPPVAVVTQTPKVAPPANTMVVKVNPLLNPAAAVVQQYNYDGLAAINFNGTSNGGGNIS
VNLVNDSIPVDVQRMGDELVIRLTGATIPSRLQKQMTVGNGLVRDVIATNQGRNGVIRVAMTGDYDYKAFQTGNQLNINI
DPPKRLREPTIEERTYSGAPLSLEFQDVSVRTILEVLAQHTNTNIVASDSVSGNITLRLINVPWDQALDIILKSKNLDKR
VNGNVIWVAPAAELAKQEADELKAQQEKKVLDPLRTEYIRLNYAKAENVRTLIEAGRATSDRSSGSTSLLTDRGTVTIDT
RTNTLIVKDTAETISNIRDLISKIDIAVKQVMIEARIVTASDAFTKELGVKWGILSQGVHSNRNLLVGGSEQTIWDLKKY
SMQSMTVNGQTVDYPSYTITRPDNLSVNLGAANPAGQIAFGLLSISDLLLDLELSAMQADNKGEVISSPKVLTSDKQTAK
IMSGTQVPYQEASASGATSTSFKDAALSLEVTPNITPEGKIGLELLIENGTPNYSTNPVSIDKDSINTSVVVDDGQTVVL
GGIFKNILGNNVTKVPFLGDLPYVDRFFKRTSKTNNKQELLIFVTPKLVNDTGRIN

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=532113 LAJ61_RS08085 WP_224053505.1 1831577..1833907(+) (pilQ) [Moraxella osloensis strain FLMOS1]
ATGAATTTTAATGCCTATCCATTTCGAACTTCAACGTCTAAGCTAGCGGTAGCGATGAGTGCGATGTTAGTATCTAGCAG
CGTGTTTGCAGCTGATACGATTAGAAATATCTCAGTTACCACGCCGAGCGCTGTGCTAACAGAACTCAATATCGACTTTG
CTAATAGTGCTGTGACGCCGACGGCTTATGAACTTGCTTCACCCACACGACTGGTGTTGGATTTTCCCAATGTGAATAAT
CAAATTTCATCACGGATGCAAACTTATAACCAAGGCTATGTCAACAATGTCACCACGCTGACCAATGACAGTATGACACG
TATGATTATTGAGTTGTCAAATCAAGCGACCTATAGTACGCGTGTGGTCAATAATCGCCTCGTTGTCTCCATGCAGCCGA
AGGGAAGCACCCCTGCAGTAACCACCGTAGCTACCAATCCAGCAATCGTTACACCTGTGGTGACTACCCCAGTCGTTGTG
AGTCAGCCCGCAGTAGTAGCGCCTGCTGTCGTCGTGACTGAACCTGTTCCTGTGATTGTCACGCCGCCACCCGTTGCCGT
CGTGACCCAAACACCAAAAGTCGCGCCACCCGCCAATACCATGGTAGTCAAAGTCAATCCTTTATTAAATCCTGCTGCCG
CCGTTGTTCAACAATACAACTATGATGGTCTAGCAGCGATTAATTTTAATGGTACCTCGAACGGCGGCGGTAATATTAGC
GTTAATTTGGTAAATGACAGCATCCCTGTGGATGTGCAGCGCATGGGTGATGAGTTAGTCATTCGTCTGACAGGCGCCAC
CATTCCAAGTCGCCTGCAAAAACAAATGACCGTAGGTAATGGCTTGGTGCGTGATGTTATCGCAACCAACCAAGGACGCA
ATGGTGTGATTCGTGTTGCCATGACAGGCGATTATGACTATAAAGCCTTTCAAACAGGTAATCAGCTAAATATCAATATC
GATCCCCCCAAACGTCTGCGCGAGCCGACCATTGAAGAGCGTACCTACAGCGGGGCACCTTTATCACTAGAGTTTCAAGA
TGTCAGCGTGCGGACGATTTTAGAAGTGTTGGCACAACATACCAATACCAATATCGTTGCCAGTGACAGCGTCAGTGGTA
ACATTACCTTGCGTCTGATTAACGTGCCTTGGGATCAAGCCTTAGATATTATCCTAAAAAGTAAAAATTTGGATAAACGG
GTTAATGGTAATGTAATTTGGGTGGCACCCGCGGCAGAACTTGCCAAACAAGAAGCCGATGAGTTAAAAGCCCAGCAAGA
GAAAAAAGTATTAGACCCACTGCGTACCGAATATATTCGACTCAACTATGCCAAAGCAGAAAATGTACGAACATTGATTG
AAGCAGGCAGAGCAACATCCGATCGCTCCAGCGGCAGTACATCACTGTTAACAGACAGAGGTACAGTCACAATCGATACC
AGAACCAACACCTTGATTGTTAAAGACACCGCTGAAACCATCAGCAACATCCGTGATTTGATTAGCAAAATCGATATTGC
TGTCAAACAAGTGATGATTGAAGCCCGCATTGTGACCGCTAGTGATGCTTTCACCAAAGAGCTTGGGGTGAAATGGGGCA
TTTTATCGCAAGGCGTGCACAGTAATCGTAATTTATTAGTGGGTGGTTCTGAGCAGACCATATGGGATCTTAAGAAATAT
AGTATGCAATCAATGACCGTAAATGGGCAAACTGTTGATTATCCTTCATACACTATTACACGACCTGACAACCTTAGTGT
CAATTTAGGTGCAGCTAACCCTGCAGGACAAATTGCCTTTGGCTTGTTGAGCATTTCAGATTTACTATTAGATTTAGAAT
TGTCAGCCATGCAAGCGGATAACAAGGGTGAAGTCATCTCCAGTCCAAAAGTGCTAACTTCTGATAAACAAACCGCCAAA
ATCATGTCAGGCACGCAAGTCCCTTATCAAGAGGCGTCGGCTAGTGGCGCAACCTCTACATCCTTTAAAGATGCCGCACT
TAGCTTAGAAGTTACTCCAAATATAACACCTGAAGGAAAGATAGGATTAGAGCTATTAATTGAGAATGGCACACCTAATT
ATTCTACTAATCCAGTTTCTATAGATAAGGATTCGATTAATACGAGTGTAGTTGTCGATGATGGTCAGACTGTGGTTTTG
GGTGGAATATTTAAAAATATTCTAGGAAATAATGTTACAAAAGTGCCTTTCTTAGGGGATTTACCTTATGTTGATCGCTT
CTTTAAACGCACCTCAAAAACCAATAACAAGCAAGAATTATTGATTTTTGTGACCCCAAAATTGGTGAATGACACGGGTC
GTATCAATTAA

Domains

Predicted by InterProScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(437-510)

Bacterial type II and III secretion system protein (Secretin)

(616-769)

Secretin and TonB N terminus short domain (STN)

(364-410)

AMIN domain (AMIN)

(48-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

50.081

79.253

0.397
  pilQ Acinetobacter baumannii strain A118

50.081

79.253

0.397
  comQ/pilQ Acinetobacter baylyi ADP1

50.249

77.706

0.39
  pilQ Pseudomonas aeruginosa PAK

36.801

99.098

0.365