Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO/pilO   Type   Machinery gene
Locus tag   LAJ61_RS08075 Genome accession   NZ_CP083409
Coordinates   1830278..1831039 (+) Length   253 a.a.
NCBI ID   WP_224053503.1    Uniprot ID   -
Organism   Moraxella osloensis strain FLMOS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825278..1836039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ61_RS08060 (LAJ61_08040) - 1825624..1828350 (-) 2727 WP_224053500.1 penicillin-binding protein 1A -
  LAJ61_RS08065 (LAJ61_08045) pilM 1828552..1829604 (+) 1053 WP_224053501.1 pilus assembly protein PilM Machinery gene
  LAJ61_RS08070 (LAJ61_08050) pilN 1829604..1830275 (+) 672 WP_224053502.1 PilN domain-containing protein Machinery gene
  LAJ61_RS08075 (LAJ61_08055) comO/pilO 1830278..1831039 (+) 762 WP_224053503.1 type 4a pilus biogenesis protein PilO Machinery gene
  LAJ61_RS08080 (LAJ61_08060) comL/pilP 1831026..1831559 (+) 534 WP_224053504.1 pilus assembly protein PilP Machinery gene
  LAJ61_RS08085 (LAJ61_08065) pilQ 1831577..1833907 (+) 2331 WP_224053505.1 type IV pilus secretin family protein Machinery gene
  LAJ61_RS08090 (LAJ61_08070) - 1834015..1834551 (+) 537 WP_160002372.1 shikimate kinase -
  LAJ61_RS08095 (LAJ61_08075) aroB 1834620..1835717 (+) 1098 WP_224053506.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28679.91 Da        Isoelectric Point: 9.6131

>NTDB_id=532111 LAJ61_RS08075 WP_224053503.1 1830278..1831039(+) (comO/pilO) [Moraxella osloensis strain FLMOS1]
MKLTNPLKRPKLVKKPVQITAKKSFDVKAFAESFKSLDQNNYGSWPVPVKVTVLLFMVAVIAFLTWFLPISTKREEIAAA
EAEQQTLLDQYRQKESKARHLKEYQAQVSKMQSDFKELLNQLPKDTRISDLVDGINMVGVGSNVKFQDIKVEPEVSQEFF
IEQPIRIAALGDYHQFGSFISGLAKLPRIITLHDFEVTNPSPSLDKLPETNLVLNVKTYRSKELNEEELKKAQKDNQKNA
AGSDNKEANNGDK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=532111 LAJ61_RS08075 WP_224053503.1 1830278..1831039(+) (comO/pilO) [Moraxella osloensis strain FLMOS1]
GTGAAATTAACCAATCCGCTAAAAAGACCGAAACTTGTCAAAAAACCTGTTCAAATTACTGCAAAAAAATCGTTTGATGT
TAAAGCCTTCGCCGAGAGCTTTAAATCACTAGACCAAAATAATTATGGTAGCTGGCCTGTGCCTGTTAAGGTTACCGTCT
TGCTATTTATGGTCGCTGTTATCGCCTTTTTAACTTGGTTTTTACCGATTAGTACCAAACGTGAGGAGATTGCCGCTGCC
GAAGCCGAGCAGCAAACCTTGCTCGATCAATATCGCCAAAAAGAATCCAAAGCACGTCATTTAAAAGAATATCAAGCCCA
AGTATCAAAAATGCAGTCTGATTTTAAAGAACTGCTCAATCAATTACCCAAAGACACCCGTATTTCTGACCTAGTGGATG
GGATTAATATGGTTGGTGTGGGCAGTAATGTCAAATTTCAGGATATTAAAGTTGAGCCAGAAGTGTCCCAAGAGTTCTTT
ATTGAGCAGCCAATTCGTATTGCCGCTTTAGGGGATTATCACCAATTTGGGTCATTCATTAGTGGGCTTGCTAAATTACC
TCGCATTATTACCCTGCATGACTTTGAAGTCACCAACCCTAGTCCTAGCTTAGACAAGCTACCAGAAACCAATCTTGTTT
TGAACGTTAAAACTTATCGTTCAAAAGAGCTAAATGAAGAAGAATTGAAAAAGGCACAAAAAGATAATCAAAAAAATGCC
GCTGGGTCTGACAATAAGGAAGCAAATAATGGCGATAAATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(78-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO/pilO Acinetobacter baylyi ADP1

44.298

90.119

0.399
  pilO Acinetobacter baumannii D1279779

47.343

81.818

0.387