Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMY07_RS15430 Genome accession   NZ_CP068709
Coordinates   3411492..3412046 (-) Length   184 a.a.
NCBI ID   WP_043295328.1    Uniprot ID   -
Organism   Burkholderia thailandensis strain AW34-19p     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3406492..3417046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMY07_RS15405 (JMY07_15405) - 3407230..3407697 (-) 468 WP_144245583.1 hypothetical protein -
  JMY07_RS15410 (JMY07_15410) - 3407855..3408172 (+) 318 WP_004522844.1 hypothetical protein -
  JMY07_RS15415 (JMY07_15415) - 3408345..3408596 (+) 252 WP_009893028.1 hypothetical protein -
  JMY07_RS15420 (JMY07_15420) - 3408759..3410339 (-) 1581 WP_009893029.1 hypothetical protein -
  JMY07_RS15425 (JMY07_15425) - 3410652..3411380 (+) 729 WP_009893030.1 dienelactone hydrolase family protein -
  JMY07_RS15430 (JMY07_15430) ssb 3411492..3412046 (-) 555 WP_043295328.1 single-stranded DNA-binding protein Machinery gene
  JMY07_RS15435 (JMY07_15435) - 3412160..3413347 (-) 1188 WP_025988549.1 MFS transporter -
  JMY07_RS15440 (JMY07_15440) uvrA 3413559..3416426 (+) 2868 WP_009893033.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 18692.44 Da        Isoelectric Point: 5.3322

>NTDB_id=530585 JMY07_RS15430 WP_043295328.1 3411492..3412046(-) (ssb) [Burkholderia thailandensis strain AW34-19p]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGSGGGGGGDDGGYGGGGGYGGGRDMERGGGGGGRASGGGGAGARSGGG
GGGASRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=530585 JMY07_RS15430 WP_043295328.1 3411492..3412046(-) (ssb) [Burkholderia thailandensis strain AW34-19p]
ATGGCATCCGTCAACAAGGTCATTCTCGTCGGCAATCTCGGCGCCGATCCCGAAGTGCGTTATCTGCCGAGCGGCGACGC
GGTGGCGAACATCCGCCTCGCGACGACCGACCGCTACAAGGACAAGGCGTCCGGCGAATTCAAGGAAATGACCGAATGGC
ACCGCGTCGCGTTCTTCGGGCGCCTTGCCGAGATCGTCAGCGAGTATCTGAAGAAGGGCTCGTCGGTGTACATCGAAGGC
CGGATTCGCACGCGCAAGTGGCAAGGCCAGGACGGCCAGGACCGTTACTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTCGGCGGCCGCGGCGGTTCGGGCGGCGGTGGCGGCGGTGACGACGGCGGCTACGGTGGCGGCGGCGGTTACGGCGGCG
GCCGCGACATGGAGCGCGGCGGTGGTGGCGGTGGCCGTGCGTCGGGCGGCGGCGGCGCGGGCGCGCGCAGCGGCGGTGGC
GGTGGCGGCGCGAGCCGGCCGAGCGCGCCGGCGGGCGGCGGATTCGACGAGATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.731

100

0.522
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.489
  ssb Neisseria gonorrhoeae MS11

42.308

98.913

0.418
  ssb Neisseria meningitidis MC58

41.758

98.913

0.413
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.413

100

0.364