Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JM964_RS02965 Genome accession   NZ_CP068708
Coordinates   597624..598565 (+) Length   313 a.a.
NCBI ID   WP_202847643.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592624..603565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS02945 (JM964_02945) - 593314..593925 (+) 612 WP_202847640.1 DUF3885 domain-containing protein -
  JM964_RS02950 (JM964_02950) - 594007..594756 (+) 750 WP_202847641.1 hypothetical protein -
  JM964_RS02955 (JM964_02955) metG 594964..596967 (+) 2004 WP_202847642.1 methionine--tRNA ligase -
  JM964_RS02960 (JM964_02960) - 596996..597562 (-) 567 WP_136581418.1 GNAT family N-acetyltransferase -
  JM964_RS02965 (JM964_02965) coiA 597624..598565 (+) 942 WP_202847643.1 competence protein CoiA Machinery gene
  JM964_RS02970 (JM964_02970) pepF 598794..600596 (+) 1803 WP_202847644.1 oligoendopeptidase F Regulator
  JM964_RS02975 (JM964_02975) - 600598..601044 (+) 447 WP_044673787.1 hypothetical protein -
  JM964_RS02980 (JM964_02980) - 601055..601603 (+) 549 WP_024384845.1 DUF6630 family protein -
  JM964_RS02985 (JM964_02985) - 601678..602397 (+) 720 WP_043034995.1 O-methyltransferase -
  JM964_RS02990 (JM964_02990) prsA 602460..603461 (+) 1002 WP_044668710.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36261.82 Da        Isoelectric Point: 8.3395

>NTDB_id=530549 JM964_RS02965 WP_202847643.1 597624..598565(+) (coiA) [Streptococcus suis strain ID33329]
MLVALDEDGQVFNVLENPAPQGSFTCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSEIYSWLVEKEQ
VELEKCLPKIGQVADLLVNNGLALEVQCSSLPISRLQVRTKAYYDTGYQVVWLLGKDLWLKERLTNLHKQFLTFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHGLTKVFPFGQGDLLSVLRSPFAKQSLSYFTCSCDQGLLDYVAKQLYYRTPKWM
NLQAEAYQQGKNLLSQSLEDFYPQIRLPRSAIGFAQIKQDLTPIYQAFDRFYDKAKDKSRQILYPPIMYRQLM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=530549 JM964_RS02965 WP_202847643.1 597624..598565(+) (coiA) [Streptococcus suis strain ID33329]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTACTTGTCC
GGGTTGTGGAGGCCTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCATGTCACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCTGCCCAGCACCTCTCCCTCAAATCAGAGATTTACAGCTGGCTTGTGGAAAAGGAGCAG
GTTGAACTTGAAAAATGCTTGCCAAAAATTGGCCAGGTCGCTGATTTATTGGTCAATAATGGTCTAGCCTTGGAAGTCCA
ATGTTCCAGTCTACCGATTTCTCGTTTGCAGGTGAGAACAAAAGCCTATTATGATACTGGTTATCAAGTTGTCTGGTTGC
TTGGTAAGGATTTATGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTCACTTTTAGTATGAACATGGGCTTT
CATCTTTGGGAACTAGATGATGAGAAGAAAGAGTTAAGACTCCGTTACCTCATTCATGAAGATTTGCGAGGTAAGGTACA
CGGTCTTACGAAAGTCTTTCCCTTTGGTCAGGGAGACTTGCTGTCTGTTCTTCGGTCACCATTTGCTAAGCAATCCTTGT
CATATTTCACTTGTTCGTGTGATCAGGGCTTGCTAGACTATGTTGCTAAACAACTCTATTACCGTACTCCCAAGTGGATG
AACTTACAGGCGGAGGCCTATCAGCAAGGAAAAAACTTGCTCAGTCAGTCCTTGGAAGACTTCTATCCCCAAATCCGTCT
GCCCCGCTCTGCTATTGGCTTTGCCCAAATCAAGCAAGACCTGACACCGATTTACCAAGCATTTGATCGGTTTTACGACA
AAGCAAAAGATAAGAGTAGACAAATCTTGTATCCACCTATAATGTATAGACAACTTATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.923

99.681

0.518
  coiA Streptococcus pneumoniae TIGR4

50.641

99.681

0.505
  coiA Streptococcus pneumoniae Rx1

50.641

99.681

0.505
  coiA Streptococcus pneumoniae D39

50.641

99.681

0.505
  coiA Streptococcus pneumoniae R6

50.641

99.681

0.505
  coiA Lactococcus lactis subsp. cremoris KW2

40.741

100

0.422