Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JM964_RS02970 Genome accession   NZ_CP068708
Coordinates   598794..600596 (+) Length   600 a.a.
NCBI ID   WP_202847644.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 593794..605596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS02950 (JM964_02950) - 594007..594756 (+) 750 WP_202847641.1 hypothetical protein -
  JM964_RS02955 (JM964_02955) metG 594964..596967 (+) 2004 WP_202847642.1 methionine--tRNA ligase -
  JM964_RS02960 (JM964_02960) - 596996..597562 (-) 567 WP_136581418.1 GNAT family N-acetyltransferase -
  JM964_RS02965 (JM964_02965) coiA 597624..598565 (+) 942 WP_202847643.1 competence protein CoiA Machinery gene
  JM964_RS02970 (JM964_02970) pepF 598794..600596 (+) 1803 WP_202847644.1 oligoendopeptidase F Regulator
  JM964_RS02975 (JM964_02975) - 600598..601044 (+) 447 WP_044673787.1 hypothetical protein -
  JM964_RS02980 (JM964_02980) - 601055..601603 (+) 549 WP_024384845.1 DUF6630 family protein -
  JM964_RS02985 (JM964_02985) - 601678..602397 (+) 720 WP_043034995.1 O-methyltransferase -
  JM964_RS02990 (JM964_02990) prsA 602460..603461 (+) 1002 WP_044668710.1 peptidylprolyl isomerase PrsA -
  JM964_RS02995 (JM964_02995) - 603670..604155 (+) 486 WP_044668712.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69162.28 Da        Isoelectric Point: 4.5553

>NTDB_id=530550 JM964_RS02970 WP_202847644.1 598794..600596(+) (pepF) [Streptococcus suis strain ID33329]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKAKDFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKATGLYSAFSQAFAFYEPEFMAITEEQLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFEAPSETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVSAVNKHLPLLHRYINMRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEEYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=530550 JM964_RS02970 WP_202847644.1 598794..600596(+) (pepF) [Streptococcus suis strain ID33329]
ATGTCTAAACAACGTTATGAAATTGAAGAAAAATACCAGTGGGATTTGACTACTATTTTCCCAACAGATGAGGCTTGGGA
AGCCGAATTGGCTGATTTGCAAGCAGAAACAGAAAAGGCAAAGGACTTTGCTGGTCACTTGCTAGACTCAGCGAAGAGCC
TTTTGGAAATCAGTGAAACGCAACTCGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAAAACGAC
CAAGATACTCGCGAAGGAAAGTATCAGGAATTTCAAGCTAAGGCTACGGGGCTTTATTCTGCCTTTTCACAGGCCTTTGC
TTTCTATGAGCCAGAATTTATGGCCATTACTGAAGAGCAGTTGGAAGCCTTCAAAGTAGAAGAGCCAGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTTTTAGCGGCTAAAGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCGACC
AGCGAGATTTTTGAAGCACCATCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTCCAGTCTAACGTTAAGGTTAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCAGCCCTTTCTGCCAACTTTATCCCAGAGTCCGTTTA
CGATACATTAGTATCAGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATATGCGTAAGAAACTCTTGGGTA
TTGATGATCTTAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCTCTCAAA
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGAGTATTCGGCTATTGTAAAAGAAGCCTTTGAAAACCGCTGGATTGA
CGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGCCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAGCAAGCGATTTACAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTATGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGATAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70

100

0.7