Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   JHT10_RS20540 Genome accession   NZ_CP068631
Coordinates   2620156..2620770 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJ-20     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2615156..2625770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT10_RS20520 (JHT10_20480) - 2615440..2616357 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  JHT10_RS20525 (JHT10_20485) - 2616610..2618280 (-) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  JHT10_RS20530 (JHT10_20490) can 2618564..2619232 (+) 669 WP_005462578.1 carbonate dehydratase -
  JHT10_RS20535 (JHT10_20495) hpt 2619307..2619837 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  JHT10_RS20540 (JHT10_20500) opaR 2620156..2620770 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  JHT10_RS20545 (JHT10_20505) lpdA 2620898..2622325 (-) 1428 WP_021823119.1 dihydrolipoyl dehydrogenase -
  JHT10_RS20550 (JHT10_20510) aceF 2622594..2624483 (-) 1890 WP_041955272.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=530078 JHT10_RS20540 WP_005479697.1 2620156..2620770(+) (opaR) [Vibrio parahaemolyticus strain TJ-20]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=530078 JHT10_RS20540 WP_005479697.1 2620156..2620770(+) (opaR) [Vibrio parahaemolyticus strain TJ-20]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGAGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCTGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701