Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   K7G42_RS01100 Genome accession   NZ_CP082783
Coordinates   176790..177110 (+) Length   106 a.a.
NCBI ID   WP_003108645.1    Uniprot ID   A0ABP2SVZ4
Organism   Streptococcus parauberis strain KRS02083     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 171790..182110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G42_RS01080 (K7G42_01070) - 174802..174948 (+) 147 WP_003108648.1 hypothetical protein -
  K7G42_RS01085 (K7G42_01075) - 174955..175410 (+) 456 WP_003108647.1 phage holin family protein -
  K7G42_RS11735 (K7G42_01080) - 175412..176137 (+) 726 WP_003108646.1 peptidoglycan amidohydrolase family protein -
  K7G42_RS01100 (K7G42_01085) comGC 176790..177110 (+) 321 WP_003108645.1 competence type IV pilus major pilin ComGC Machinery gene
  K7G42_RS01105 (K7G42_01090) comGD 177100..177507 (+) 408 WP_243619590.1 competence type IV pilus minor pilin ComGD Machinery gene
  K7G42_RS01110 (K7G42_01095) comGE 177479..177778 (+) 300 WP_003108643.1 competence type IV pilus minor pilin ComGE Machinery gene
  K7G42_RS01115 (K7G42_01100) comGF/cglF 177756..178193 (+) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF Machinery gene
  K7G42_RS01120 (K7G42_01105) comGG 178171..178668 (+) 498 WP_003108640.1 competence type IV pilus minor pilin ComGG -
  K7G42_RS01125 (K7G42_01110) comGH 178775..179731 (+) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  K7G42_RS01130 (K7G42_01115) - 179787..180980 (+) 1194 WP_003108638.1 acetate kinase -
  K7G42_RS01135 (K7G42_01120) - 181091..181303 (+) 213 WP_003108636.1 helix-turn-helix transcriptional regulator -
  K7G42_RS01140 (K7G42_01125) - 181296..181748 (+) 453 WP_003108634.1 hypothetical protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 12046.11 Da        Isoelectric Point: 7.0082

>NTDB_id=529189 K7G42_RS01100 WP_003108645.1 176790..177110(+) (comGC) [Streptococcus parauberis strain KRS02083]
MSEITDTKYLSVLWTFIEMLMVILIISILMLLFIPNLNKQKEKVLDTGGEALVKIVENQAELYALNNAGKVPSLNDLKSN
GNLTEKQITAYNDYYKKHSDKIPNVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=529189 K7G42_RS01100 WP_003108645.1 176790..177110(+) (comGC) [Streptococcus parauberis strain KRS02083]
ATGTCTGAAATAACAGATACTAAATATTTAAGTGTTTTATGGACATTTATTGAGATGCTAATGGTTATTCTTATTATTTC
TATACTGATGCTCTTATTTATTCCAAATTTAAACAAACAAAAAGAAAAAGTCTTGGATACCGGAGGAGAGGCTCTAGTTA
AAATAGTTGAAAATCAAGCTGAACTCTATGCATTGAACAATGCTGGCAAAGTGCCATCATTAAATGATTTAAAGAGCAAT
GGAAATTTAACAGAAAAGCAAATAACCGCTTATAATGATTATTATAAAAAACACAGTGATAAAATCCCAAATGTTAAATA
A

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Streptococcus mutans UA140

56.522

86.792

0.491
  comGC Streptococcus mutans UA159

56.522

86.792

0.491
  comGC Streptococcus gordonii str. Challis substr. CH1

53.261

86.792

0.462
  comGC/cglC Streptococcus mitis SK321

54.651

81.132

0.443
  comGC Lactococcus lactis subsp. cremoris KW2

51.648

85.849

0.443
  comGC/cglC Streptococcus pneumoniae D39

52.326

81.132

0.425
  comGC/cglC Streptococcus pneumoniae R6

52.326

81.132

0.425
  comGC/cglC Streptococcus pneumoniae Rx1

52.326

81.132

0.425
  comGC/cglC Streptococcus pneumoniae TIGR4

52.326

81.132

0.425
  comGC/cglC Streptococcus mitis NCTC 12261

52.941

80.189

0.425