Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   JSY00_RS00730 Genome accession   NZ_CP082778
Coordinates   120118..120525 (+) Length   135 a.a.
NCBI ID   WP_024395446.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32098     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 115118..125525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS00710 (JSY00_00710) - 116919..117869 (-) 951 WP_014637311.1 S66 peptidase family protein -
  JSY00_RS00715 (JSY00_00715) comGA 117955..118905 (+) 951 WP_105140681.1 competence type IV pilus ATPase ComGA Machinery gene
  JSY00_RS00720 (JSY00_00720) comGB 118817..119854 (+) 1038 WP_238492613.1 competence type IV pilus assembly protein ComGB Machinery gene
  JSY00_RS00725 (JSY00_00725) comGC 119856..120137 (+) 282 WP_024395447.1 competence type IV pilus major pilin ComGC Machinery gene
  JSY00_RS00730 (JSY00_00730) comGD 120118..120525 (+) 408 WP_024395446.1 competence type IV pilus minor pilin ComGD Machinery gene
  JSY00_RS00735 (JSY00_00735) comGE 120497..120790 (+) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  JSY00_RS00740 (JSY00_00740) comGF/cglF 120777..121211 (+) 435 WP_024395445.1 competence type IV pilus minor pilin ComGF Machinery gene
  JSY00_RS00745 (JSY00_00745) comGG 121189..121599 (+) 411 WP_024395444.1 competence type IV pilus minor pilin ComGG -
  JSY00_RS00750 (JSY00_00750) comGH 121656..122609 (+) 954 WP_044776365.1 class I SAM-dependent methyltransferase Machinery gene
  JSY00_RS00755 (JSY00_00755) - 122659..123846 (+) 1188 WP_014637319.1 acetate kinase -
  JSY00_RS00760 (JSY00_00760) - 124107..124658 (+) 552 WP_014637320.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15333.49 Da        Isoelectric Point: 8.3772

>NTDB_id=529099 JSY00_RS00730 WP_024395446.1 120118..120525(+) (comGD) [Streptococcus suis strain ID32098]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQAAFQSVQEEIFLWEFEAIYKDSQKLAASSHQKVNLAIGGQEVTNGYQ
AVEVPRNVEVLEEKTIQFEENGGNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=529099 JSY00_RS00730 WP_024395446.1 120118..120525(+) (comGD) [Streptococcus suis strain ID32098]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTTGTTGTCAGTTTTTTAGCAGTTTC
TTTGTCGGGAACGGTGCAAGCAGCCTTTCAGTCAGTTCAAGAAGAGATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCACCAAAAAGTGAACCTTGCTATCGGTGGACAAGAAGTTACAAATGGTTATCAG
GCTGTAGAGGTGCCCAGAAACGTAGAGGTTTTAGAGGAGAAAACTATTCAGTTTGAAGAAAATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGCCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

48.819

94.074

0.459
  comGD Streptococcus mutans UA159

47.287

95.556

0.452
  comGD Streptococcus mutans UA140

47.287

95.556

0.452
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis SK321

44.186

95.556

0.422
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363