Detailed information NTG0529075

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: JK628_RS20420
• Genome accession: NZ_CP068437
• Coordinates: 4720292..4721818 (+)
• Length: 508 a.a.
• NCBI ID: WP_202286743.1
• Uniprot ID: -
• Organism: Shewanella sp. KX20019
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4715292..4726818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JK628_RS20395 (JK628_20395)	-	4715999..4717540 (-)	1542	WP_202286739.1	EAL domain-containing protein	-
JK628_RS20400 (JK628_20400)	-	4717778..4718521 (+)	744	WP_202286740.1	winged helix-turn-helix domain-containing protein	-
JK628_RS20405 (JK628_20405)	-	4718514..4719005 (+)	492	WP_202286741.1	hypothetical protein	-
JK628_RS20410 (JK628_20410)	tnpB	4719164..4719526 (+)	363	WP_202286742.1	IS66 family insertion sequence element accessory protein TnpB	-
JK628_RS20415 (JK628_20415)	-	4719613..4719810 (+)	198	WP_202289937.1	hypothetical protein	-
JK628_RS20420 (JK628_20420)	comM	4720292..4721818 (+)	1527	WP_202286743.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
JK628_RS20425 (JK628_20425)	-	4721993..4722898 (+)	906	WP_202286744.1	acyltransferase	-
JK628_RS20430 (JK628_20430)	-	4722905..4723846 (+)	942	WP_202286745.1	acyltransferase	-
JK628_RS20435 (JK628_20435)	-	4724219..4724629 (+)	411	WP_202286746.1	energy transducer TonB	-
JK628_RS20440 (JK628_20440)	-	4724710..4725798 (-)	1089	WP_202286747.1	branched-chain amino acid aminotransferase	-
JK628_RS20445 (JK628_20445)	-	4725915..4726685 (-)	771	WP_202286748.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 54950.85 Da
• Isoelectric Point: 7.0572

>NTDB_id=529075 JK628_RS20420 WP_202286743.1 4720292..4721818(+) (comM) [Shewanella sp. KX20019]
MALACVETRASCGVDAPPVTVEVHLSNGLPAFSLVGLPEASVKEAKERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQIPPKSIEQHEFVGELALSGHVRYCQGILPVIVAASQANNRLILPIDNRADAELVGFNKVLFATHL
QSIAAYLHGQSELPSIDLGLEWITPTSNTSDASNCLSEVIGQQHAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMQLL
PPLNYEEALEVASIHSVAGHDMQPQQFYQRPFRSPHHTSSAVSLVGGGAMPKPGEISLAHRGVLFLDEVAEFPRKVLDCL
REPMETGEVSISRAAAKLNFLCRFQLVAAMNPSPCGDVNNARASNEQIIRYLSKLSGPFLDRFDLTIDVPKLPLGALNSS
GTHAETSATVAQRVHAAREIQLSRSGTLNSDLSGKQLKDEARFSAADLLFLEESVSRLGLSVRSYHRLQRVARTIADLQQ
EQDVSRSHIAQALGYRAVDRLLTSLNQY

Nucleotide

• Length: 1527 bp

>NTDB_id=529075 JK628_RS20420 WP_202286743.1 4720292..4721818(+) (comM) [Shewanella sp. KX20019]
ATGGCATTAGCCTGTGTTGAAACCCGCGCCAGTTGTGGCGTCGACGCCCCTCCTGTCACAGTAGAGGTCCATTTAAGTAA
TGGCTTGCCTGCATTCTCTTTAGTCGGACTCCCCGAAGCCTCTGTAAAAGAAGCCAAAGAGCGGGTACGTAGCGCACTGA
TTAACGCGGGGTTTGAGTTCCCAATGCGCCGCATTACCGTTAACTTGGCGCCTGCTGACCTGCCAAAACAGGGGGGGCGC
TATGATCTGCCGATAGCGATTGGCATTCTCGCGGCCTCAAAACAAATTCCACCTAAGTCGATTGAACAGCATGAGTTTGT
CGGTGAACTGGCCCTCTCCGGTCATGTACGTTATTGCCAAGGGATCCTGCCAGTCATTGTGGCAGCCAGCCAAGCAAACA
ACCGCCTAATACTGCCGATTGATAATCGAGCCGATGCCGAGCTCGTCGGCTTTAATAAAGTGTTATTTGCCACCCATCTA
CAATCAATCGCTGCTTATTTACATGGTCAATCTGAGTTACCCAGCATTGATCTTGGACTGGAATGGATCACCCCAACGAG
CAACACTAGCGACGCCAGTAACTGTCTCAGTGAAGTAATAGGCCAACAACATGCGAAACAAGCATTAGAGATAGCCGCCG
CAGGCAACCACAACCTATTGATGCTGGGTCCGCCAGGTACTGGCAAGACAATGCTCGCCAGTCGCATGATGCAGCTGCTA
CCGCCACTTAATTATGAAGAGGCACTCGAAGTCGCCTCGATTCACTCTGTTGCCGGACACGATATGCAGCCGCAACAATT
CTATCAACGGCCGTTTCGAAGCCCGCACCATACCAGTTCTGCTGTTTCATTAGTGGGCGGTGGCGCTATGCCAAAACCGG
GGGAAATATCCCTCGCCCATCGCGGGGTACTTTTTCTAGATGAAGTGGCTGAATTTCCGCGCAAAGTTCTCGACTGTCTG
CGTGAGCCGATGGAAACCGGTGAGGTGAGTATTTCTCGTGCTGCGGCCAAGCTTAATTTTTTATGTCGCTTTCAGCTGGT
GGCGGCCATGAACCCCAGCCCCTGCGGGGATGTGAATAATGCCAGAGCCAGCAATGAGCAGATCATCCGCTATTTATCTA
AGTTGTCAGGGCCGTTTCTCGACCGCTTTGATTTAACTATTGATGTCCCCAAACTACCTCTAGGTGCGCTCAATAGCAGT
GGTACTCACGCCGAAACCAGTGCAACTGTCGCTCAACGAGTGCATGCAGCAAGAGAGATTCAGTTATCACGTTCGGGTAC
GCTCAACAGCGACTTAAGCGGCAAACAACTTAAAGATGAGGCGCGATTTAGCGCAGCAGATCTGTTATTTCTTGAGGAGA
GTGTCAGTCGATTAGGGTTATCGGTACGCAGTTACCATCGGCTACAACGTGTTGCTCGCACCATAGCAGATCTGCAACAG
GAACAAGATGTATCGCGGAGCCATATCGCGCAAGCGTTAGGTTACCGAGCCGTAGACCGCTTACTGACTAGCTTAAACCA
GTACTAA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (196-393)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (405-496)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	56.102	100	0.561
comM	Haemophilus influenzae Rd KW20	55.686	100	0.559
comM	Glaesserella parasuis strain SC1401	53.937	100	0.539
comM	Vibrio campbellii strain DS40M4	53.831	100	0.539
comM	Legionella pneumophila str. Paris	48.235	100	0.484
comM	Legionella pneumophila strain ERS1305867	48.235	100	0.484
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	43.714	100	0.445