Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JJL14_RS21630 Genome accession   NZ_CP068287
Coordinates   4515446..4516966 (+) Length   506 a.a.
NCBI ID   WP_063148419.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 1575     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4510446..4521966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL14_RS21605 (JJL14_21615) ilvE 4512013..4512942 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  JJL14_RS21610 (JJL14_21620) ilvM 4512961..4513224 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  JJL14_RS21615 (JJL14_21625) ilvG 4513221..4514867 (-) 1647 WP_063843938.1 acetolactate synthase 2 catalytic subunit -
  JJL14_RS21620 (JJL14_21630) ilvX 4514870..4514920 (-) 51 WP_166792073.1 peptide IlvX -
  JJL14_RS21625 (JJL14_21635) ilvL 4515007..4515105 (-) 99 WP_001311244.1 ilv operon leader peptide -
  JJL14_RS21630 (JJL14_21640) comM 4515446..4516966 (+) 1521 WP_063148419.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JJL14_RS21635 (JJL14_21645) - 4516993..4517331 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  JJL14_RS21640 (JJL14_21650) hdfR 4517450..4518271 (+) 822 WP_022649779.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54694.64 Da        Isoelectric Point: 7.3360

>NTDB_id=528757 JJL14_RS21630 WP_063148419.1 4515446..4516966(+) (comM) [Enterobacter hormaechei strain 1575]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTSGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENEEVVADSPDDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSISLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSAAVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=528757 JJL14_RS21630 WP_063148419.1 4515446..4516966(+) (comM) [Enterobacter hormaechei strain 1575]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCCGAAACGACCGTTAAGGAGGCCAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGTCAGGGTTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GGCAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTCAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACATGAGCTTGCCGAGCCGCAGGAGAATGAGGAGGTAGTGGCAGATTCACC
CGATGACCTCAGCGATATTATGGGTCAGGAACAGGGTAAGCGGGCGTTAGAAATAACGGCCGCGGGTGGGCATAACCTGC
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGGTTGAGCGGCCTGCTGCCCCCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCAATATCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCGCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGCTCAATTCCCGGACCGGGTGAAATCTCACTGGCAC
ACAACGGCATTCTGTTCCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCGTTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGCGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCAACGGGCCATTATCAGGGCAACCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCACCGCCCGGTCTGCTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAGCGGTGCGAGAACGGGTTATTGCGGCTCAGGCGCGGCAGTATGCCCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGCTCTCTCAACGCCGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCTGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGACATTTGCAGGAGGCATTAAGCTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.136

100

0.595
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.648

99.407

0.583
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.433