Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JK151_RS03255 Genome accession   NZ_CP068285
Coordinates   694949..695485 (-) Length   178 a.a.
NCBI ID   WP_075465388.1    Uniprot ID   A0A1U9VHP1
Organism   Ralstonia syzygii subsp. celebesensis strain UGMSS_Db01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 691423..694242 694949..695485 flank 707


Gene organization within MGE regions


Location: 691423..695485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK151_RS03240 (JK151_03240) - 691429..692700 (+) 1272 WP_172840182.1 IS256 family transposase -
  JK151_RS03245 (JK151_03245) - 692965..694236 (-) 1272 WP_172840182.1 IS256 family transposase -
  JK151_RS03250 (JK151_03250) - 694248..694565 (-) 318 WP_078222391.1 nuclease-related domain-containing protein -
  JK151_RS03255 (JK151_03255) ssb 694949..695485 (-) 537 WP_075465388.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18617.37 Da        Isoelectric Point: 5.9786

>NTDB_id=528722 JK151_RS03255 WP_075465388.1 694949..695485(-) (ssb) [Ralstonia syzygii subsp. celebesensis strain UGMSS_Db01]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLAEIAGEYLKKGSQVYVEG
RLKTRQWEKDGQKQYSTEIVAEQMQMLGGRQGEGGGGAGGGYSRGESSGGGGYGGGRAQGGGTSRGEGGGQGGGQGGGAR
RQPAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=528722 JK151_RS03255 WP_075465388.1 694949..695485(-) (ssb) [Ralstonia syzygii subsp. celebesensis strain UGMSS_Db01]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCCGAAACGCGTTACATGCCGAGCGGCGACGC
CGTCACCAATATCCGCGTGGCGACCACCGACCGCTACAAGGACAAGGCCAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCCGCCTGGCCGAAATCGCTGGCGAATACCTGAAGAAGGGTTCGCAGGTCTACGTCGAGGGC
CGCCTCAAGACCCGCCAATGGGAGAAGGACGGCCAGAAGCAATACAGCACCGAAATCGTCGCCGAGCAGATGCAGATGCT
CGGCGGCCGCCAGGGCGAGGGCGGTGGTGGCGCCGGCGGCGGCTACTCGCGCGGCGAATCGTCGGGCGGTGGCGGCTACG
GCGGTGGCCGCGCCCAGGGCGGCGGCACGAGCCGCGGCGAGGGCGGTGGTCAGGGCGGTGGTCAGGGTGGCGGCGCGCGC
CGTCAGCCGGCACCGTCGAATGGGTTTGAGGATATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9VHP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.189

100

0.511
  ssb Glaesserella parasuis strain SC1401

48.37

100

0.5
  ssb Neisseria meningitidis MC58

45.506

100

0.455
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.455
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.64

100

0.376