Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABCA12_RS14725 Genome accession   NZ_CP068253
Coordinates   3081787..3083274 (+) Length   495 a.a.
NCBI ID   WP_194596791.1    Uniprot ID   A0A8I0RZJ9
Organism   Acinetobacter junii strain CAM121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3076787..3088274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS14700 (ABCA12_3003) ribD 3077648..3078748 (-) 1101 WP_151723418.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ABCA12_RS14705 (ABCA12_3004) nrdR 3078761..3079225 (-) 465 WP_004957298.1 transcriptional regulator NrdR -
  ABCA12_RS14710 (ABCA12_3005) - 3079396..3080808 (-) 1413 WP_004917056.1 ammonium transporter -
  ABCA12_RS14715 (ABCA12_3006) glnK 3080876..3081214 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  ABCA12_RS14720 (ABCA12_3007) - 3081490..3081717 (+) 228 WP_004958469.1 accessory factor UbiK family protein -
  ABCA12_RS14725 (ABCA12_3008) comM 3081787..3083274 (+) 1488 WP_194596791.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABCA12_RS14730 (ABCA12_3009) - 3083310..3084098 (-) 789 WP_201897864.1 TorF family putative porin -
  ABCA12_RS14735 (ABCA12_3010) - 3084444..3085214 (-) 771 WP_004917065.1 TorF family putative porin -
  ABCA12_RS14740 (ABCA12_3011) - 3085956..3087281 (+) 1326 WP_042892338.1 OprD family outer membrane porin -
  ABCA12_RS14745 (ABCA12_3012) ppa 3087388..3087915 (-) 528 WP_004917070.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54366.06 Da        Isoelectric Point: 7.7617

>NTDB_id=528647 ABCA12_RS14725 WP_194596791.1 3081787..3083274(+) (comM) [Acinetobacter junii strain CAM121]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEGFEFIGELALDGHLRPTSGALTIAMACQQAKHHLVLPESNVDEANQLEDFQVYPAKHL
QDVCAHFLGSSQIRAAPQRSISSLSQYQYDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHHFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHRGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQAQELQDQKPSE
NSETVRHRVIKAYQQQIKRQQCLNQALSPQLLDQHARLDEGSAKIIEMAQQRLNLSARAYHRVLRVARTIADLAESDMIS
SSHLTEALSYRGSNS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=528647 ABCA12_RS14725 WP_194596791.1 3081787..3083274(+) (comM) [Acinetobacter junii strain CAM121]
ATGTCTTTTGCAAAAATTTATACAAGGGGATTATTGGGGCTACATGCGCCTCAAATCGAGGTCGAAGTTCATATTAGTTC
TGGCCTACCGTCTTTAACTATCGTGGGTTTACCTGAGGCAGCAGTTCGAGAAAGTAAAGATCGCGTTCGATCCGCAATAA
TTAATAGTGGTTTTCTTTTCCCAACCAAACGTTTAACCATCAATTTAGCACCTGCAGACTTGCCCAAAGATGGGTCACGA
CTTGACCTGCCAATTGCATTGGGAATTTTAATCGCATCAGGTCAGCTTCCTGAAAATTGTACGGAAGGATTTGAATTTAT
TGGTGAACTTGCTTTGGATGGTCATTTACGTCCAACTTCAGGGGCATTAACTATTGCTATGGCTTGTCAGCAAGCTAAGC
ATCATTTAGTTCTTCCTGAATCAAATGTGGACGAGGCAAATCAACTAGAAGACTTTCAAGTTTATCCTGCCAAACATTTA
CAAGATGTATGTGCACATTTTTTGGGCAGTAGCCAAATAAGAGCCGCACCACAACGATCTATTTCATCATTATCACAATA
TCAATACGATCTTGCCGATGTTAAAGGTCAGCTTCGCCCACGCCGAGCATTGGAAATTGCAGCTGCAGGAGGTCATTCAT
TACTCTTTAAGGGACCACCTGGCACTGGAAAAACATTACTTGCATCTCGACTGCCTTCAATTTTACCCCCTTTGAATGCT
CAAGAAAATTTAGAGGTTGCTAGTATCTATTCCGTAGCAAATGCTCAACATCATTTCGGTCAGCGCCCTTTTCGTGCACC
TCACCATACAGCATCTGCGATCGCTTTGGTTGGTGGAGGCTCTCAACCAAAACCTGGAGAAATTACGCTTGCTCATCGCG
GCGTTTTGTTTTTAGATGAATTACCTGAATTCGACCGCAAAGTGCTTGAAGTTCTGCGCCAACCTTTAGAGTCTAAAGAA
ATCGTAATTTCTCGCGCGGCGAGACAAATGACCTTCCCTGCAAATTTTCAGTTTATCGCTGCAATGAATCCATGCCCTTG
TGGATATGCATTTAATCAAGATAGTCGTTGTCAGTGTTCGCCTGAAAGTATTCAGCGTTATCAAAATCGAATTTCAGGTC
CACTTTTGGATCGAATCGATCTGCATATCGATGTTCCACCCTTGCAAGCTCAAGAGCTACAAGACCAAAAACCCTCAGAA
AACTCTGAAACTGTTCGTCATCGAGTGATAAAAGCATATCAACAACAGATCAAAAGACAGCAATGCTTAAACCAAGCGCT
TTCACCCCAACTTTTGGATCAACATGCTCGTTTAGACGAGGGATCTGCAAAAATTATTGAAATGGCACAACAAAGATTAA
ATCTATCGGCCCGTGCTTATCATCGGGTACTTCGCGTTGCAAGAACGATTGCTGACTTAGCTGAGAGTGACATGATATCT
AGCTCACATTTAACAGAAGCCTTGTCTTATCGAGGTAGCAATAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.606

100

0.519
  comM Glaesserella parasuis strain SC1401

50.4

100

0.509
  comM Vibrio campbellii strain DS40M4

49.899

100

0.499
  comM Haemophilus influenzae Rd KW20

49.299

100

0.497
  comM Legionella pneumophila str. Paris

48.193

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.193

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.463