Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHW37_RS03540 Genome accession   NZ_CP068238
Coordinates   724536..725033 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain A39-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 719536..730033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS03525 (JHW37_03525) bfr 719546..720010 (+) 465 WP_053816631.1 bacterioferritin -
  JHW37_RS03530 (JHW37_03530) uvrA 720080..722917 (-) 2838 WP_034079223.1 excinuclease ABC subunit UvrA -
  JHW37_RS03535 (JHW37_03535) - 723131..724519 (+) 1389 WP_043098854.1 MFS transporter -
  JHW37_RS03540 (JHW37_03540) ssb 724536..725033 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  JHW37_RS03545 (JHW37_03545) - 725122..726552 (-) 1431 WP_053816632.1 isochorismate synthase -
  JHW37_RS03550 (JHW37_03550) pchB 726549..726854 (-) 306 WP_043102697.1 isochorismate lyase PchB -
  JHW37_RS03555 (JHW37_03555) - 726854..727609 (-) 756 WP_053816633.1 thioesterase II family protein -
  JHW37_RS03560 (JHW37_03560) - 727606..729249 (-) 1644 WP_053816634.1 (2,3-dihydroxybenzoyl)adenylate synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=528407 JHW37_RS03540 WP_003114685.1 724536..725033(+) (ssb) [Pseudomonas aeruginosa strain A39-1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=528407 JHW37_RS03540 WP_003114685.1 724536..725033(+) (ssb) [Pseudomonas aeruginosa strain A39-1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGACCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGTCCCTCCGGCGACGACTCGCAGCGCGCCCCGCGCGAACCCATGCAGCGCCCGCAGC
AGGCGCCGCAGCAGCAGTCGCGTCCGGCACCGCAGCAGCAACCTGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515