Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJN11_RS01265 Genome accession   NZ_CP068234
Coordinates   271886..272410 (+) Length   174 a.a.
NCBI ID   WP_156653724.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain YZ30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 266886..277410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN11_RS01245 (JJN11_01245) aphA 267211..267921 (+) 711 WP_103177854.1 acid phosphatase AphA -
  JJN11_RS01250 (JJN11_01250) - 268036..268452 (+) 417 WP_114316150.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JJN11_RS01255 (JJN11_01255) - 268455..268808 (+) 354 WP_103177856.1 MmcQ/YjbR family DNA-binding protein -
  JJN11_RS01260 (JJN11_01260) uvrA 268809..271634 (-) 2826 WP_156653723.1 excinuclease ABC subunit UvrA -
  JJN11_RS01265 (JJN11_01265) ssb 271886..272410 (+) 525 WP_156653724.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JJN11_RS01270 (JJN11_01270) - 272482..273375 (-) 894 WP_156653725.1 LysR family transcriptional regulator -
  JJN11_RS01275 (JJN11_01275) - 273474..274196 (+) 723 WP_156653726.1 SDR family oxidoreductase -
  JJN11_RS01280 (JJN11_01280) - 274407..274616 (+) 210 WP_156653727.1 YdgH/BhsA/McbA-like domain containing protein -
  JJN11_RS01285 (JJN11_01285) - 274672..275418 (-) 747 WP_156653728.1 SDR family oxidoreductase -
  JJN11_RS01290 (JJN11_01290) - 275520..276401 (-) 882 WP_156653729.1 AraC family transcriptional regulator -
  JJN11_RS01295 (JJN11_01295) - 276411..277055 (-) 645 WP_259935564.1 NAD(P)-binding domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18721.73 Da        Isoelectric Point: 5.2456

>NTDB_id=528358 JJN11_RS01265 WP_156653724.1 271886..272410(+) (ssb) [Leclercia adecarboxylata strain YZ30]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQPSAPAQ
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=528358 JJN11_RS01265 WP_156653724.1 271886..272410(+) (ssb) [Leclercia adecarboxylata strain YZ30]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACCTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAGGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCTGGCCAGGAAAAATACACCACTGAAGTGGTGGTGAACGTTGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCGCCAGCAGGCGGCCAGCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCCATCTGCGCCAGCGCAG
TCCAACGAACCGCCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.477
  ssb Neisseria meningitidis MC58

45.856

100

0.477
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374