Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JKK44_RS19825 Genome accession   NZ_CP068228
Coordinates   4451261..4452781 (+) Length   506 a.a.
NCBI ID   WP_208165993.1    Uniprot ID   -
Organism   Shewanella algae strain G1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4449486..4450586 4451261..4452781 flank 675


Gene organization within MGE regions


Location: 4449486..4452781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK44_RS19815 (JKK44_19810) - 4449486..4450580 (-) 1095 WP_117200396.1 ISAs1 family transposase -
  JKK44_RS19820 (JKK44_19815) - 4450662..4451114 (+) 453 WP_208165992.1 hypothetical protein -
  JKK44_RS19825 (JKK44_19820) comM 4451261..4452781 (+) 1521 WP_208165993.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54511.94 Da        Isoelectric Point: 8.2656

>NTDB_id=528280 JKK44_RS19825 WP_208165993.1 4451261..4452781(+) (comM) [Shewanella algae strain G1]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDEHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYQQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPYSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKELKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=528280 JKK44_RS19825 WP_208165993.1 4451261..4452781(+) (comM) [Shewanella algae strain G1]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAAGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGGGTTCGCAGCGCCATAA
TCAATGCGGGTTTTGAGTTCCCTATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAGGGTGGACGG
TACGACCTTCCTATTGCCATTGGAATCCTGGCAGCATCCGGACAGCTGCCACTGAAATCCCTGGACGAGCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGGATCCTGCCGGTGATCATTGCCGCCCGTCAAAGAGGTA
TCAAACTGGTATTGCCACAGGATAACCGTAGTGAGGCGGATTTGGTGGGCTATCAACAGTGTTGCCTGGCCCAGCACCTG
CAACATATTGCCGCCTATCTGCACGGGCAGCAAACCCTGCCGGGGATAGTGCCGGGAACCGAATGGCTGGAACAATCCAA
GCCATACTCAAGTGACTGCCTGTCGGAAGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCGGCAGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGTACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCTCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCGGCAATTCATTCAGTGGCCGGCATGGCCACTGAGCCGGGGGAATTTTATCG
CCGCCCGTTTCGCGCTCCGCACCATACCAGCTCGGCCATCTCTTTAGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCGCTGGCTCACCTTGGGGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCCTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTTATCGCCGC
CATGAACCCCAGCCCCTGTGGTGATGCAGGCCCAGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCTGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAGGGTGAAACCAGTGAGCAGATTGCCGCCAGAGTCGCTGCGGCCAGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGAATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCAGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCTCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTTTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.016

100

0.561
  comM Haemophilus influenzae Rd KW20

55.273

100

0.559
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

55.03

100

0.551
  comM Legionella pneumophila str. Paris

48.297

98.617

0.476
  comM Legionella pneumophila strain ERS1305867

48.297

98.617

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

100

0.435