Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JKK33_RS19280 Genome accession   NZ_CP068227
Coordinates   4362323..4363843 (+) Length   506 a.a.
NCBI ID   WP_107352469.1    Uniprot ID   A0A379ZW61
Organism   Shewanella algae strain A59     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4357323..4368843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK33_RS19255 (JKK33_19255) - 4358184..4359152 (-) 969 WP_181317053.1 ABC transporter substrate-binding protein -
  JKK33_RS19260 (JKK33_19260) - 4359342..4359590 (-) 249 WP_025010076.1 hypothetical protein -
  JKK33_RS19265 (JKK33_19265) - 4359746..4360561 (-) 816 WP_144226303.1 EAL domain-containing protein -
  JKK33_RS19270 (JKK33_19270) - 4360880..4361677 (+) 798 WP_025010078.1 winged helix-turn-helix domain-containing protein -
  JKK33_RS19275 (JKK33_19275) - 4361665..4362165 (+) 501 WP_054744206.1 hypothetical protein -
  JKK33_RS19280 (JKK33_19280) comM 4362323..4363843 (+) 1521 WP_107352469.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JKK33_RS19285 (JKK33_19285) - 4363943..4364839 (+) 897 WP_146146513.1 LysR substrate-binding domain-containing protein -
  JKK33_RS19290 (JKK33_19290) phnX 4364942..4365751 (-) 810 WP_208125199.1 phosphonoacetaldehyde hydrolase -
  JKK33_RS19295 (JKK33_19295) - 4365739..4366866 (-) 1128 WP_156018594.1 phosphonoacetaldehyde reductase -
  JKK33_RS19300 (JKK33_19300) phnE 4366885..4367688 (-) 804 WP_144131482.1 phosphonate ABC transporter, permease protein PhnE -
  JKK33_RS19305 (JKK33_19305) phnC 4367682..4368509 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54418.86 Da        Isoelectric Point: 8.7084

>NTDB_id=528256 JKK33_RS19280 WP_107352469.1 4362323..4363843(+) (comM) [Shewanella algae strain A59]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPNSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=528256 JKK33_RS19280 WP_107352469.1 4362323..4363843(+) (comM) [Shewanella algae strain A59]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATCACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATCATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTGTTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCATGGACAGCAAACCCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCCAA
GCCGAACTCGAGTGACTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCGGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCTTGTGGAGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATTGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAGGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379ZW61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

55.078

100

0.557
  comM Vibrio campbellii strain DS40M4

55.03

100

0.551
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433