Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JKK45_RS19845 Genome accession   NZ_CP068226
Coordinates   4534639..4536159 (+) Length   506 a.a.
NCBI ID   WP_208123884.1    Uniprot ID   -
Organism   Shewanella algae strain A291     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4529639..4541159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK45_RS19820 (JKK45_19825) - 4530500..4531576 (-) 1077 WP_208123883.1 ABC transporter substrate-binding protein -
  JKK45_RS19825 (JKK45_19830) - 4531658..4531906 (-) 249 WP_025010076.1 hypothetical protein -
  JKK45_RS19830 (JKK45_19835) - 4532062..4532877 (-) 816 WP_096142467.1 EAL domain-containing protein -
  JKK45_RS19835 (JKK45_19840) - 4533196..4533993 (+) 798 WP_025010078.1 winged helix-turn-helix domain-containing protein -
  JKK45_RS19840 (JKK45_19845) - 4533981..4534481 (+) 501 WP_025010079.1 hypothetical protein -
  JKK45_RS19845 (JKK45_19850) comM 4534639..4536159 (+) 1521 WP_208123884.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JKK45_RS19850 (JKK45_19855) - 4536259..4537155 (+) 897 WP_208123885.1 LysR substrate-binding domain-containing protein -
  JKK45_RS19855 (JKK45_19860) phnX 4537258..4538067 (-) 810 WP_208123886.1 phosphonoacetaldehyde hydrolase -
  JKK45_RS19860 (JKK45_19865) - 4538055..4539182 (-) 1128 WP_044735374.1 phosphonoacetaldehyde reductase -
  JKK45_RS19865 (JKK45_19870) phnE 4539201..4540004 (-) 804 WP_208123887.1 phosphonate ABC transporter, permease protein PhnE -
  JKK45_RS19870 (JKK45_19875) phnC 4539998..4540825 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54498.00 Da        Isoelectric Point: 8.7098

>NTDB_id=528232 JKK45_RS19845 WP_208123884.1 4534639..4536159(+) (comM) [Shewanella algae strain A291]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTTSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGEISEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPSDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=528232 JKK45_RS19845 WP_208123884.1 4534639..4536159(+) (comM) [Shewanella algae strain A291]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
TGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTAATTATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCATGGACAGCAAACTCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCGCACTCGAGTGATTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCACCTCGGCCATCTCTTTGGTGGGTGGAGGCTCGATTCCCAAACCCGGCGAAA
TTTCACTGGCTCACCTGGGAGTACTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGCTTTCAACTTATCGCCGC
CATGAACCCCAGCCCCTGTGGTGATGCTGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAGGGTGAAATCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCAGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCACGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAAGCCTTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.621

100

0.557
  comM Haemophilus influenzae Rd KW20

54.688

100

0.553
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.635

100

0.547
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433