Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K7H19_RS02810 Genome accession   NZ_CP082323
Coordinates   505293..506564 (-) Length   423 a.a.
NCBI ID   WP_011228013.1    Uniprot ID   Q5SKV2
Organism   Thermus thermophilus strain N-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 500293..511564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H19_RS02790 (K7H19_02790) sucD 501175..502041 (-) 867 WP_011228009.1 succinate--CoA ligase subunit alpha -
  K7H19_RS02795 (K7H19_02795) sucC 502038..503213 (-) 1176 WP_011228010.1 ADP-forming succinate--CoA ligase subunit beta -
  K7H19_RS02800 (K7H19_02800) - 503258..504292 (+) 1035 WP_011228011.1 bis-aminopropyl spermidine synthase family protein -
  K7H19_RS02805 (K7H19_02805) - 504286..505296 (-) 1011 WP_011228012.1 PIN/TRAM domain-containing protein -
  K7H19_RS02810 (K7H19_02810) radA 505293..506564 (-) 1272 WP_011228013.1 DNA repair protein RadA Machinery gene
  K7H19_RS02815 (K7H19_02815) clpC 506575..508785 (-) 2211 WP_011172629.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  K7H19_RS02820 (K7H19_02820) - 508914..510434 (+) 1521 WP_011228014.1 glycine--tRNA ligase -
  K7H19_RS02825 (K7H19_02825) - 510615..510851 (+) 237 WP_011172631.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 44999.12 Da        Isoelectric Point: 7.1985

>NTDB_id=528124 K7H19_RS02810 WP_011228013.1 505293..506564(-) (radA) [Thermus thermophilus strain N-1]
MAKATYACVECGYRTPKPLGRCPSCGSWESFQEVAPAPASRRAKPSPLPLLALSQVDEAEERRFSSGLSEVDRVLGGGFV
TGEVVLLGGEPGVGKSTLLLEMAKRMPQRVYYVAGEESPAQIKLRAQRLGVKDLLLVRETRLEPLLALLEEDPPEVLFVD
SVQTLEAGGSPGSLVAVREATSALVRFAKERGVAVVLVGHVTKEGVVAGPKSVEHAVDATLYLETAGPYRVLRSAKNRFG
PVGEIGVFRMEEAGLLEVENPSEAFLKERPLGVPGSAVALALAGERALALEVQALAAKTPFPAPRRVVQGLDGRRVDVVL
AVLERRLGLPLANLDVYVNLAGGLKVQDPGLDLAVALAVYSAVVGRPLPADLALVGEVGLAGEVRRVAGLERRLREGERA
GFGRFLHPGNLKRLQEAVEAYLA

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=528124 K7H19_RS02810 WP_011228013.1 505293..506564(-) (radA) [Thermus thermophilus strain N-1]
ATGGCCAAGGCCACCTACGCCTGCGTGGAGTGCGGCTACCGCACCCCCAAGCCCTTGGGGCGGTGCCCCTCCTGCGGTTC
CTGGGAGAGCTTCCAGGAGGTGGCCCCCGCCCCGGCCTCGAGGCGGGCCAAGCCCTCCCCCCTCCCCCTCCTCGCCCTCT
CCCAGGTGGACGAGGCCGAGGAGCGCCGCTTCTCCTCGGGGCTTTCCGAGGTGGACCGGGTCCTGGGCGGGGGGTTCGTG
ACGGGGGAGGTGGTTCTATTGGGAGGGGAGCCCGGGGTGGGCAAGAGCACCCTCCTCCTGGAGATGGCCAAGCGGATGCC
CCAAAGGGTCTACTACGTGGCCGGGGAGGAGTCCCCCGCCCAGATCAAGCTCCGGGCGCAGCGCCTCGGGGTGAAGGACC
TCCTCCTCGTGCGGGAGACCCGCCTCGAGCCCCTCCTCGCCCTCCTGGAGGAGGACCCCCCGGAGGTCCTCTTCGTGGAC
TCCGTGCAGACCCTCGAGGCCGGGGGGAGCCCGGGGAGCTTGGTGGCCGTCCGGGAGGCGACCTCGGCCCTGGTGCGCTT
CGCCAAGGAACGGGGCGTGGCCGTGGTCCTCGTGGGCCACGTGACCAAGGAGGGGGTGGTGGCCGGCCCCAAGAGCGTGG
AGCACGCCGTGGACGCCACCCTCTACCTGGAGACCGCAGGGCCCTACCGGGTCCTGCGGAGCGCCAAGAACCGCTTCGGC
CCCGTGGGGGAGATCGGGGTCTTCCGCATGGAGGAGGCGGGGCTTCTGGAGGTGGAGAACCCCTCCGAGGCCTTCCTCAA
GGAGCGCCCCCTGGGGGTGCCGGGAAGCGCCGTGGCCCTGGCCCTGGCCGGGGAGCGGGCCTTGGCCCTGGAGGTCCAGG
CCCTGGCGGCCAAAACCCCCTTCCCCGCCCCCCGCAGGGTGGTCCAGGGGCTGGACGGAAGGCGCGTGGACGTGGTCCTC
GCGGTCCTGGAGCGGAGGCTCGGCCTGCCCCTCGCCAACCTGGACGTCTACGTGAACCTCGCCGGGGGGCTCAAGGTCCA
GGACCCGGGGCTGGACCTGGCCGTGGCCCTGGCGGTGTACTCCGCCGTGGTGGGCCGCCCCCTGCCCGCCGACCTCGCCC
TGGTGGGGGAGGTGGGCCTGGCCGGGGAGGTGCGGCGGGTGGCGGGGCTGGAGCGGAGGCTTAGGGAGGGGGAGCGGGCG
GGGTTCGGCCGCTTCCTCCACCCGGGGAACCTTAAGCGCCTTCAGGAGGCTGTGGAGGCGTACCTGGCATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(63-205)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(6-33)

Subunit ChlI of Mg-chelatase (ChlI)

(327-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5H45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

44.893

99.527

0.447
  radA Streptococcus pneumoniae Rx1

44.893

99.527

0.447
  radA Streptococcus pneumoniae D39

44.893

99.527

0.447
  radA Streptococcus pneumoniae TIGR4

44.893

99.527

0.447
  radA Streptococcus mitis SK321

44.893

99.527

0.447
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.953

100

0.447
  radA Streptococcus mitis NCTC 12261

44.656

99.527

0.444