Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   I6J13_RS00545 Genome accession   NZ_CP068213
Coordinates   107452..108414 (+) Length   320 a.a.
NCBI ID   WP_006270162.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 102452..113414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS00525 (I6J13_00525) - 103182..104543 (+) 1362 WP_006270176.1 DUF1958 domain-containing protein -
  I6J13_RS00530 (I6J13_00530) - 104623..105792 (+) 1170 WP_006270163.1 MFS transporter -
  I6J13_RS00535 (I6J13_00535) - 106087..107073 (+) 987 Protein_108 6-phospho-beta-glucosidase -
  I6J13_RS00540 (I6J13_00540) celB 107067..107363 (+) 297 Protein_109 PTS cellobiose transporter subunit IIC -
  I6J13_RS00545 (I6J13_00545) coiA 107452..108414 (+) 963 WP_006270162.1 competence protein CoiA Machinery gene
  I6J13_RS00550 (I6J13_00550) pepF 108434..110236 (+) 1803 WP_003069865.1 oligoendopeptidase F Regulator
  I6J13_RS00555 (I6J13_00555) - 110237..110920 (+) 684 WP_006270129.1 O-methyltransferase -
  I6J13_RS00560 (I6J13_00560) prsA 111027..111965 (+) 939 WP_006270138.1 peptidylprolyl isomerase PrsA -
  I6J13_RS00565 (I6J13_00565) - 112190..112675 (+) 486 WP_006270122.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37857.65 Da        Isoelectric Point: 9.1255

>NTDB_id=528017 I6J13_RS00545 WP_006270162.1 107452..108414(+) (coiA) [Streptococcus constellatus strain FDAARGOS_1156]
MLIACQENGNLLNAVEDTVNPLDKFLCPACLEAVRFKKGRVMRPHFAHISLKDCHFYTENESAEHLNLKAALFTWARKSN
HAVQVEAYLPKLQQIADLLVEKQIALEVQCSSLSQKRLKERTDSYHQHGYHVLWLLGKKLWLKDSLTNLQKDFLYFSQNM
GFYLWELDDKKQKIRLKYLIHEDLHGRAQYKVQSFPFGQGSLLTVLRTPFQRQEMTSFLAKEDKNICRYVRQQLYYQQPK
WMKLQAELYQAGDNLLTKTASDFYPQVQPVRASSFCQIFQDLTPYYQQFSAYYEKEKNKNFQILYPPAFYTRILSVFMIE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=528017 I6J13_RS00545 WP_006270162.1 107452..108414(+) (coiA) [Streptococcus constellatus strain FDAARGOS_1156]
ATGCTAATAGCTTGTCAGGAAAATGGGAACCTACTAAATGCTGTGGAAGATACGGTAAATCCGCTGGATAAATTTCTCTG
TCCAGCTTGTTTGGAGGCGGTCCGTTTTAAAAAAGGAAGAGTCATGCGACCGCATTTTGCTCATATTTCTTTAAAAGACT
GTCATTTTTATACGGAAAATGAAAGCGCAGAACACCTGAATTTGAAAGCTGCCTTGTTTACTTGGGCCAGAAAGTCTAAT
CATGCAGTTCAAGTGGAAGCGTATTTACCTAAATTGCAACAAATTGCAGATCTGTTAGTAGAGAAACAGATTGCGCTTGA
AGTTCAATGCAGTTCGCTGAGTCAAAAGCGCTTAAAAGAGCGTACGGACAGTTATCATCAGCACGGTTATCATGTTCTTT
GGCTATTAGGAAAGAAACTTTGGCTGAAAGATTCTTTAACTAATTTGCAAAAAGATTTTCTTTATTTCAGTCAAAATATG
GGCTTTTATCTGTGGGAATTGGATGATAAAAAGCAGAAGATTCGACTCAAGTATCTGATTCACGAAGATTTGCATGGTCG
AGCTCAATATAAGGTCCAGTCTTTTCCTTTTGGTCAGGGCAGCCTTTTGACTGTTCTGCGAACGCCCTTTCAACGGCAGG
AGATGACCAGTTTTTTAGCAAAAGAGGATAAAAATATTTGCCGTTATGTTCGTCAACAGCTCTATTATCAACAACCTAAA
TGGATGAAATTACAGGCAGAATTGTATCAAGCGGGTGATAATTTATTGACTAAAACGGCTAGTGACTTTTATCCGCAGGT
TCAGCCTGTTCGTGCCAGCTCTTTTTGTCAGATTTTTCAAGACCTCACACCTTATTACCAACAATTTTCAGCTTATTATG
AAAAGGAAAAGAATAAAAATTTTCAAATTCTCTATCCTCCAGCTTTTTATACAAGGATTTTATCAGTATTTATGATAGAA
TAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(23-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

53.125

100

0.531
  coiA Streptococcus mitis NCTC 12261

53.125

100

0.531
  coiA Streptococcus pneumoniae Rx1

52.812

100

0.528
  coiA Streptococcus pneumoniae D39

52.812

100

0.528
  coiA Streptococcus pneumoniae R6

52.812

100

0.528
  coiA Lactococcus lactis subsp. cremoris KW2

43.519

100

0.441