Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6J13_RS00550 Genome accession   NZ_CP068213
Coordinates   108434..110236 (+) Length   600 a.a.
NCBI ID   WP_003069865.1    Uniprot ID   A0AAD2Y3Y8
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 103434..115236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS00530 (I6J13_00530) - 104623..105792 (+) 1170 WP_006270163.1 MFS transporter -
  I6J13_RS00535 (I6J13_00535) - 106087..107073 (+) 987 Protein_108 6-phospho-beta-glucosidase -
  I6J13_RS00540 (I6J13_00540) celB 107067..107363 (+) 297 Protein_109 PTS cellobiose transporter subunit IIC -
  I6J13_RS00545 (I6J13_00545) coiA 107452..108414 (+) 963 WP_006270162.1 competence protein CoiA Machinery gene
  I6J13_RS00550 (I6J13_00550) pepF 108434..110236 (+) 1803 WP_003069865.1 oligoendopeptidase F Regulator
  I6J13_RS00555 (I6J13_00555) - 110237..110920 (+) 684 WP_006270129.1 O-methyltransferase -
  I6J13_RS00560 (I6J13_00560) prsA 111027..111965 (+) 939 WP_006270138.1 peptidylprolyl isomerase PrsA -
  I6J13_RS00565 (I6J13_00565) - 112190..112675 (+) 486 WP_006270122.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69382.75 Da        Isoelectric Point: 4.6883

>NTDB_id=528018 I6J13_RS00550 WP_003069865.1 108434..110236(+) (pepF) [Streptococcus constellatus strain FDAARGOS_1156]
MAKQRNEIEEKYTWDLTTIFPTDEAFEMELAQVSKELKEASHLAGHLLDSADSLLKTTDIQMDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQVFAFYEPEFMAITDEQYQVFLVEKPELQIYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPIVHDEEGNEVQLTHGNYISLVESKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYESLVSAVNKHLPLLHRYVQLRAKILGISDLKMYDVYTPLSEIDYKFTYEAALT
KAEEVLAILGDDYLNRVKKAFSERWIDVCENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNNLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYATGFSAASALADKIVNGTQEDKEKYLHYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=528018 I6J13_RS00550 WP_003069865.1 108434..110236(+) (pepF) [Streptococcus constellatus strain FDAARGOS_1156]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGATTTAACGACGATTTTCCCAACGGATGAAGCGTTTGA
AATGGAATTAGCGCAAGTTTCAAAGGAATTAAAAGAAGCTAGTCATTTAGCAGGTCATCTTTTGGATTCAGCCGATAGCC
TTTTAAAAACGACAGACATCCAAATGGATTTAATGCGTCGTATTGAAAAGCTCTATTCCTATGCTCACATGAAAAATGAT
CAAGATACGCGTGTGGCAAAATATCAAGAGTATCAAGCCAAGGGCATGGCTATTTATAGCGAGTTCGGGCAGGTGTTTGC
TTTCTATGAGCCAGAATTTATGGCAATTACAGATGAACAGTATCAGGTTTTCTTAGTTGAAAAACCTGAATTGCAAATCT
ATCAGCACTTCTTTGACAAGTTATTGCAAAAGAAACCTCACATCCTTTCTCAACGCGAGGAAGAATTGTTGGCAGGTGCT
GGTGAAATTTTTAGTGCTGCTGGTGATACTTTTGGAATTTTGGACAATGCCGATATCGTCTTTCCAATTGTACATGATGA
AGAAGGCAATGAAGTACAATTGACGCATGGAAATTACATTAGCTTAGTGGAGTCAAAAAATCGTACAGTCCGTAAGGAAG
CTTATGAAGCACTTTATAGCGTTTATGAACAATATCAACATACTTATGCTAAGACACTCCAAACAAATGTTAAGGTGCAT
AATTACAATGCAAAAGTACGTAAGTTTTCTTCGGCACGCGAAGCAGCCTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGAGAGCTTGGTGTCTGCAGTCAACAAACATTTACCGCTCTTACATCGCTATGTTCAGTTACGAGCTAAGATTTTAGGCA
TTTCAGATCTCAAGATGTATGACGTTTATACACCGCTATCAGAGATAGATTATAAATTTACCTATGAAGCAGCTTTGACG
AAAGCGGAAGAAGTTTTAGCAATTCTTGGAGATGATTATCTTAACCGAGTGAAAAAAGCCTTTTCAGAGCGTTGGATTGA
TGTTTGTGAGAATCAAGGTAAACGGTCAGGAGCTTATTCTGGCGGCTCTTACGATACTAATGCTTTTATGTTGCTGAATT
GGCAAGATACCTTAGATAATCTCTTCACCTTGGTTCATGAAACGGGTCATAGTATGCATTCTAGCTATACTCGTGAAACA
CAGCCTTATGTTTATGGTGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACTACCAATGAAAATATACTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACTCGTTTTGCGATTCTGAATCATTTCTTGGATGGCTTCCGCGGAACTGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAGCATGCTATCCATAAGGCTGATCAAGAAGGTCAAGTCTTAACTAGTGAATTT
TTGAATAATTTATACGCAGATTTGAACGAAAAATATTATGGTTTGACGAAAGAAGATAATCCACAAATTCAATACGAATG
GGCACGGATTCCTCATTTTTACTATGACTATTATGTATTTCAATATGCGACTGGTTTTTCAGCAGCATCTGCCTTAGCCG
ATAAAATTGTCAATGGAACGCAAGAAGATAAAGAGAAATATCTCCATTATCTCAAAGCAGGAAATTCTGATTATCCGCTG
AATGTCATTAAAAAAGCTGGTGTTGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTTGTAGAAAAGTTGGGCTTAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.96

99.333

0.685