Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6I51_RS13030 Genome accession   NZ_CP068187
Coordinates   2564041..2565528 (-) Length   495 a.a.
NCBI ID   WP_201702206.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2559041..2570528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS13005 (I6I51_13010) - 2559122..2559526 (+) 405 WP_201702192.1 MAPEG family protein -
  I6I51_RS13010 (I6I51_13015) ppa 2559644..2560171 (+) 528 WP_058868713.1 inorganic diphosphatase -
  I6I51_RS13015 (I6I51_13020) - 2560274..2561617 (-) 1344 WP_201702202.1 OprD family outer membrane porin -
  I6I51_RS13020 (I6I51_13025) - 2562077..2562847 (+) 771 WP_201702204.1 TorF family putative porin -
  I6I51_RS13025 (I6I51_13030) - 2563195..2563932 (+) 738 WP_125273434.1 TorF family putative porin -
  I6I51_RS13030 (I6I51_13035) comM 2564041..2565528 (-) 1488 WP_201702206.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6I51_RS13035 (I6I51_13040) - 2565555..2565821 (-) 267 WP_201702208.1 accessory factor UbiK family protein -
  I6I51_RS13040 (I6I51_13045) glnK 2566097..2566435 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  I6I51_RS13045 (I6I51_13050) - 2566495..2567898 (+) 1404 WP_010325684.1 ammonium transporter -
  I6I51_RS13050 (I6I51_13055) nrdR 2568050..2568508 (+) 459 WP_004692852.1 transcriptional regulator NrdR -
  I6I51_RS13055 (I6I51_13060) ribD 2568523..2569626 (+) 1104 WP_125280626.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54441.29 Da        Isoelectric Point: 7.8053

>NTDB_id=527909 I6I51_RS13030 WP_201702206.1 2564041..2565528(-) (comM) [Acinetobacter johnsonii strain FDAARGOS_1094]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQADHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQKFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDNRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQAVE
DSATVRERVIQAYEWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEQIQ
TGHLTEALSYRGQHH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=527909 I6I51_RS13030 WP_201702206.1 2564041..2565528(-) (comM) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCTGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATCAACCTTGCGCCCGCAGATCTGCCCAAAGACAGCTCGCGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCGATTGCCTGCCAGCAAGCTGACC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTATTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAAAAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAGTTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCAAGACGCGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTACCGCCCTTGAACACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGACAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCTGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAAGTTTTAGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTAATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTGATTGCCGCAATGAACCCGTGTCCCTG
TGGTTATGCTTTTAATCAAGATAACCGTTGCCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGCATTTCAGGGC
CTTTGTTGGATCGAATTGATTTACATATTGATGTACCACCCTTGCATGCTTCTGAATTGCAGGACACACAAGCCGTGGAA
GACTCGGCAACTGTACGTGAACGCGTGATTCAAGCTTATGAATGGCAAATGCAACGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCACTCGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAGCAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCATCGGATTTTAAGAGTGGCCAGAACCATTGCCGACTTAGCGCAGTCTGAACAGATTCAA
ACAGGCCACTTAACCGAAGCCCTGTCTTATCGTGGGCAACATCACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.104

100

0.525
  comM Glaesserella parasuis strain SC1401

51.292

100

0.521
  comM Vibrio campbellii strain DS40M4

51.515

100

0.515
  comM Vibrio cholerae strain A1552

51.107

100

0.513
  comM Legionella pneumophila str. Paris

50.6

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.6

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.467