Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I51_RS10600 Genome accession   NZ_CP068187
Coordinates   2033784..2034389 (-) Length   201 a.a.
NCBI ID   WP_406935379.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2035062..2048887 2033784..2034389 flank 673


Gene organization within MGE regions


Location: 2033784..2048887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS10600 (I6I51_10605) ssb 2033784..2034389 (-) 606 WP_406935379.1 single-stranded DNA-binding protein Machinery gene
  I6I51_RS10605 (I6I51_10610) - 2035062..2035466 (+) 405 WP_004691434.1 transposase family protein -
  I6I51_RS10610 (I6I51_10615) - 2035504..2035896 (+) 393 Protein_2011 transposase family protein -
  I6I51_RS10615 (I6I51_10620) - 2036148..2036327 (+) 180 WP_125281869.1 helix-turn-helix transcriptional regulator -
  I6I51_RS10620 (I6I51_10625) - 2036381..2037546 (+) 1166 WP_201701823.1 IS3-like element ISAba22 family transposase -
  I6I51_RS10625 (I6I51_10630) - 2037689..2037829 (-) 141 Protein_2014 YgjP-like metallopeptidase domain-containing protein -
  I6I51_RS10630 (I6I51_10635) - 2037839..2037982 (-) 144 Protein_2015 IS30 family transposase -
  I6I51_RS10635 (I6I51_10640) - 2038302..2038802 (-) 501 WP_201701825.1 YqhA family protein -
  I6I51_RS10640 (I6I51_10645) ssb 2039186..2039770 (-) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  I6I51_RS10645 (I6I51_10650) - 2039822..2041186 (-) 1365 WP_005401546.1 MFS transporter -
  I6I51_RS10650 (I6I51_10655) - 2041346..2042425 (-) 1080 WP_058952492.1 DUF475 domain-containing protein -
  I6I51_RS10655 (I6I51_10660) tenA 2042638..2043312 (+) 675 WP_201701835.1 thiaminase II -
  I6I51_RS10660 (I6I51_10665) - 2043474..2043848 (+) 375 WP_201701837.1 hypothetical protein -
  I6I51_RS10665 (I6I51_10670) uvrA 2044168..2046999 (+) 2832 WP_201701839.1 excinuclease ABC subunit UvrA -
  I6I51_RS10670 (I6I51_10675) - 2047067..2047960 (+) 894 WP_201701840.1 pentapeptide repeat-containing protein -
  I6I51_RS10675 (I6I51_10680) - 2047963..2048598 (+) 636 WP_201701843.1 nucleotidyltransferase domain-containing protein -
  I6I51_RS10680 (I6I51_10685) - 2048585..2048887 (+) 303 WP_201701845.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22073.84 Da        Isoelectric Point: 5.7903

>NTDB_id=527903 I6I51_RS10600 WP_406935379.1 2033784..2034389(-) (ssb) [Acinetobacter johnsonii strain FDAARGOS_1094]
MDTATYSKTNMSKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKG
SKVYIEGSLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAA
GNSNNQQSGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=527903 I6I51_RS10600 WP_406935379.1 2033784..2034389(-) (ssb) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGGATACTGCAACTTATAGTAAAACTAATATGAGCAAAGTCATATTAGTGGGCACATTAGGCCGAGATCCAGAGACGAA
AACTTTTCCAAACGGTGGTTCGTTGACCCAGTTTTCAATTGCCACAAGTGACTCTTGGACAGATAAAAGCACAGGTGAGC
GTAAAGAGCAAACCGAATGGCACCGTATTGTATTACACAACCGCCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGT
TCGAAAGTTTATATTGAAGGTTCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAAT
TCGTGGTGAGCAAATGCAGATGCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCAC
AACCACGTTTCAACAATAACCAAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGCAATCCTGCAGCG
GGTAATAGCAACAACCAACAAAGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCCAAGGCGGCTCCTCAGTCAGC
GCCTGCGGCAGCACCAGCAGATATGGATGATGATCTTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(11-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49

99.502

0.488
  ssb Vibrio cholerae strain A1552

43.147

98.01

0.423
  ssb Neisseria meningitidis MC58

40.704

99.005

0.403
  ssb Neisseria gonorrhoeae MS11

40.704

99.005

0.403