Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I51_RS10640 Genome accession   NZ_CP068187
Coordinates   2039186..2039770 (-) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2035062..2048887 2039186..2039770 within 0


Gene organization within MGE regions


Location: 2035062..2048887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS10605 (I6I51_10610) - 2035062..2035466 (+) 405 WP_004691434.1 transposase family protein -
  I6I51_RS10610 (I6I51_10615) - 2035504..2035896 (+) 393 Protein_2011 transposase family protein -
  I6I51_RS10615 (I6I51_10620) - 2036148..2036327 (+) 180 WP_125281869.1 helix-turn-helix transcriptional regulator -
  I6I51_RS10620 (I6I51_10625) - 2036381..2037546 (+) 1166 WP_201701823.1 IS3-like element ISAba22 family transposase -
  I6I51_RS10625 (I6I51_10630) - 2037689..2037829 (-) 141 Protein_2014 YgjP-like metallopeptidase domain-containing protein -
  I6I51_RS10630 (I6I51_10635) - 2037839..2037982 (-) 144 Protein_2015 IS30 family transposase -
  I6I51_RS10635 (I6I51_10640) - 2038302..2038802 (-) 501 WP_201701825.1 YqhA family protein -
  I6I51_RS10640 (I6I51_10645) ssb 2039186..2039770 (-) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  I6I51_RS10645 (I6I51_10650) - 2039822..2041186 (-) 1365 WP_005401546.1 MFS transporter -
  I6I51_RS10650 (I6I51_10655) - 2041346..2042425 (-) 1080 WP_058952492.1 DUF475 domain-containing protein -
  I6I51_RS10655 (I6I51_10660) tenA 2042638..2043312 (+) 675 WP_201701835.1 thiaminase II -
  I6I51_RS10660 (I6I51_10665) - 2043474..2043848 (+) 375 WP_201701837.1 hypothetical protein -
  I6I51_RS10665 (I6I51_10670) uvrA 2044168..2046999 (+) 2832 WP_201701839.1 excinuclease ABC subunit UvrA -
  I6I51_RS10670 (I6I51_10675) - 2047067..2047960 (+) 894 WP_201701840.1 pentapeptide repeat-containing protein -
  I6I51_RS10675 (I6I51_10680) - 2047963..2048598 (+) 636 WP_201701843.1 nucleotidyltransferase domain-containing protein -
  I6I51_RS10680 (I6I51_10685) - 2048585..2048887 (+) 303 WP_201701845.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=527904 I6I51_RS10640 WP_004691666.1 2039186..2039770(-) (ssb) [Acinetobacter johnsonii strain FDAARGOS_1094]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=527904 I6I51_RS10640 WP_004691666.1 2039186..2039770(-) (ssb) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCAACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAGTACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAATAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTACGGCGGCAACCCTGCAGCGGGCAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCACCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423