Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6I53_RS06095 Genome accession   NZ_CP068176
Coordinates   1184704..1186188 (-) Length   494 a.a.
NCBI ID   WP_004995382.1    Uniprot ID   A0A7T9Z7S8
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1179704..1191188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS06070 (I6I53_06075) - 1180278..1180664 (-) 387 WP_004995389.1 hypothetical protein -
  I6I53_RS06075 (I6I53_06080) - 1180780..1181178 (+) 399 WP_004995388.1 MAPEG family protein -
  I6I53_RS06080 (I6I53_06085) ppa 1181334..1181861 (+) 528 WP_004995387.1 inorganic diphosphatase -
  I6I53_RS06085 (I6I53_06090) - 1181938..1183233 (-) 1296 WP_004995385.1 OprD family outer membrane porin -
  I6I53_RS06090 (I6I53_06095) - 1183841..1184653 (+) 813 WP_035254074.1 TorF family putative porin -
  I6I53_RS06095 (I6I53_06100) comM 1184704..1186188 (-) 1485 WP_004995382.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6I53_RS06100 (I6I53_06105) - 1186257..1186484 (-) 228 WP_004995380.1 accessory factor UbiK family protein -
  I6I53_RS06105 (I6I53_06110) glnK 1186760..1187098 (+) 339 WP_004656379.1 P-II family nitrogen regulator -
  I6I53_RS06110 (I6I53_06115) - 1187161..1188564 (+) 1404 WP_004995379.1 ammonium transporter -
  I6I53_RS06115 (I6I53_06120) nrdR 1188686..1189153 (+) 468 WP_004995378.1 transcriptional regulator NrdR -
  I6I53_RS06120 (I6I53_06125) ribD 1189146..1190246 (+) 1101 WP_034699768.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54535.60 Da        Isoelectric Point: 7.6316

>NTDB_id=527820 I6I53_RS06095 WP_004995382.1 1184704..1186188(-) (comM) [Acinetobacter ursingii strain FDAARGOS_1096]
MSFAKILTRGVLGLHAPLIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPEACTDGFEFIGELALDGHLRPVTSALSIAMACQQAQHQLFIPKANLEQVEQLSEFQLYSANHL
KQVCEHFLGIHPLPAHITQNNNHTQAYKYDLIDVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSA
QENLEVASIYSIANNQHHFGLRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLITAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQANELQNNAPVE
DSMTVRKRVMSAYDSQIQRQQKANFALSPQELEQYAVLDAHAEKMMEVAQQRMNLSARSYHRILRVARTIADLSHSPNIE
ITHLSEALSYRQKI

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=527820 I6I53_RS06095 WP_004995382.1 1184704..1186188(-) (comM) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGTCTTTTGCAAAAATTTTAACTCGCGGGGTATTAGGGTTACATGCTCCTTTAATTGAGGTCGAAGTTCATTTAAGTCA
GGGGCTTCCCTCACTCACCATCGTTGGGCTAGCAGAAGCAGCGGTACGTGAAAGTAAGGATCGAGTACGCTCTGCGATTA
TTAACAGTGGTTTTCAGTTTCCAACCAAACGCCTAACCATTAATCTGGCACCAGCGGATCTGCCGAAAGATGGATCCCGT
CTTGATCTCGCCATTGCTCTTGGGATTCTGATTGCCTCTGGGCAGTTGCCTGAAGCCTGTACAGATGGATTTGAATTTAT
TGGAGAATTGGCTTTGGATGGGCATTTAAGACCCGTCACCAGTGCTCTAAGCATAGCGATGGCGTGTCAACAAGCGCAAC
ATCAGCTTTTTATTCCTAAGGCGAATCTTGAACAGGTGGAACAGCTTTCTGAATTTCAACTTTATTCAGCCAACCACTTA
AAACAGGTCTGTGAACATTTTCTGGGAATACACCCTCTTCCTGCTCATATCACTCAAAATAACAATCATACTCAAGCTTA
TAAATATGATCTGATTGATGTAAAAGGACAATTACGACCACGTCGTGCGCTTGAAATTGCCGCAGCTGGAGGACACTCTT
TATTATTTAAGGGGCCACCGGGTACTGGTAAAACGTTGTTAGCTTCACGTCTACCTAGCATTTTGCCGCCGTTATCGGCA
CAGGAAAATCTTGAAGTCGCCAGTATCTACTCGATTGCCAATAATCAGCATCATTTTGGCTTACGCCCATTCCGAGCACC
GCATCACACGGCTTCTGCGATTGCATTGGTAGGTGGAGGTTCACATCCTAAACCCGGAGAAATTACACTGGCTCATTTAG
GCGTTTTATTTTTAGATGAGTTACCAGAGTTTGATCGCAAAGTACTTGAAGTATTACGACAACCACTTGAATCTAAAGAA
ATCGTGATTTCACGTGCATCTCGACAAATTACCTTTCCTGCTAATTTTCAGCTGATTACAGCAATGAATCCATGCCCGTG
TGGTTATGCATTTAATCAGGATAGTCGCTGCCAGTGTTCACCTGAATCAATTCAACGTTATCAAAATCGAATTTCAGGAC
CTTTGCTGGATCGAATCGATTTACATATTGATGTTCCTCCATTACAAGCCAATGAATTACAAAATAATGCACCTGTAGAA
GATTCTATGACTGTGCGTAAACGTGTGATGAGTGCTTATGACTCTCAGATTCAGCGTCAACAAAAAGCAAATTTTGCACT
TTCACCCCAAGAATTAGAACAATATGCGGTACTGGATGCGCATGCTGAAAAAATGATGGAAGTTGCACAACAACGTATGA
ATTTATCGGCGCGCTCTTATCATCGTATTTTACGTGTTGCACGTACTATTGCAGATTTATCACACAGTCCTAATATTGAA
ATTACACATTTATCAGAAGCGTTGTCTTATCGACAAAAGATTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T9Z7S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.516
  comM Vibrio campbellii strain DS40M4

51.111

100

0.512
  comM Glaesserella parasuis strain SC1401

50.4

100

0.51
  comM Haemophilus influenzae Rd KW20

49.402

100

0.502
  comM Legionella pneumophila str. Paris

47.921

100

0.49
  comM Legionella pneumophila strain ERS1305867

47.921

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.024

100

0.447