Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BPC006_RS02070 Genome accession   NC_018527
Coordinates   435387..436973 (-) Length   528 a.a.
NCBI ID   WP_004530962.1    Uniprot ID   -
Organism   Burkholderia pseudomallei BPC006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 430387..441973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPC006_RS02045 (BPC006_I0465) - 431110..431646 (-) 537 WP_004198028.1 peroxiredoxin family protein -
  BPC006_RS02050 (BPC006_I0466) - 431720..432529 (+) 810 WP_004530963.1 hypothetical protein -
  BPC006_RS02055 (BPC006_I0467) - 433216..433995 (-) 780 WP_004535336.1 thioesterase II family protein -
  BPC006_RS41455 (BPC006_I0468) - 434114..434302 (-) 189 WP_004198025.1 hypothetical protein -
  BPC006_RS02065 (BPC006_I0469) - 434508..434972 (+) 465 WP_004185200.1 GNAT family N-acetyltransferase -
  BPC006_RS02070 (BPC006_I0470) comM 435387..436973 (-) 1587 WP_004530962.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BPC006_RS02075 (BPC006_I0471) - 437111..437362 (-) 252 WP_004198021.1 accessory factor UbiK family protein -
  BPC006_RS02080 (BPC006_I0472) - 437731..438069 (+) 339 WP_004198020.1 P-II family nitrogen regulator -
  BPC006_RS02085 (BPC006_I0473) - 438102..439604 (+) 1503 WP_004526016.1 ammonium transporter -
  BPC006_RS02090 (BPC006_I0474) gshA 440018..441307 (+) 1290 WP_004522914.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 55438.32 Da        Isoelectric Point: 7.4051

>NTDB_id=52773 BPC006_RS02070 WP_004530962.1 435387..436973(-) (comM) [Burkholderia pseudomallei BPC006]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMRGAFAMACGTARGQQADDDGSPAQAESPPARATAPNAAELY
LPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHM
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLA
HLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKL
SGPLLDRIDIQIEIPALTPAELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDA
GERFRWSARAYYRVLKVARTIADLAGDDAPSAAHIAEAIRYRRAFAPA

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=52773 BPC006_RS02070 WP_004530962.1 435387..436973(-) (comM) [Burkholderia pseudomallei BPC006]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTGCCGGCCGTGCGCCGGAAGTCACCGTCGAAGTCCATCTCGCCAA
CGGTCTGCCGTCGTTCTCGATCGTCGGGCTGCCCGATCTCGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGGTTCGAGTTTCCCGTGCGGCGCATCACCGTCAACCTCGCGCCGGCCGATTTGCCGAAGGAGTCCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCCGCGAGCGGCCAGCTTCCGGCCGGCGCGCTCGACGGCCGCGAGTTCGC
GGGCGAGCTGTCGCTCACGGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCGTGCGGCACGGCGCGCGGCCAGC
AGGCGGACGACGACGGCTCGCCCGCGCAAGCCGAATCGCCGCCCGCGCGGGCGACGGCGCCGAACGCCGCCGAGCTCTAC
CTGCCGCTGCCGAGCGCGGCCGAGGCGGCGCTCGTGCCGGGCGTGACCGTGTACGGCGCGGCCGATCTGCCCGCGCTGTG
CGCGCACCTCGCCGACACGCCGGACGGGCGGCTCGCCCCCGTCGCCGCGCCCCGGCTCGACGCGCTCCCCGCCGCAGCGA
CGGCCGATCTCGCCGATGTGATCGGCCAGGCGGGCGCGAAGCGCGCGCTCGAAGTCGCCGCCGCGGGCGGCCACCACATG
CTGATGATCGGGCCGCCGGGCGCGGGCAAATCGATGCTCGCCGCGCGCCTGCCCGCCCTCTTGCCGCCGCTCACCGATGA
CGAGGCACTGACGTCGGCCGCGATCCTGTCGTCGAGCCGCGCGGGCTTCTCGCCCGCTCAATGGCGGCGGCGCCCGTTTC
GCGCGCCGCATCACTCGTCGAGCTCGGCCGCGCTCGTCGGCGGCCGCAATCCGCCGCAGCCGGGCGAGATCACGCTCGCA
CACCTGGGCGTGCTGTTCCTCGACGAGCTGCCGGAATTCGACCGGCACGTGCTCGAGACGCTGCGCGAGCCGCTCGAGGC
CGGCCGCATCACGATCTCGCGCGCCGCGCTGCAGGCGGATTTTCCGGCCGCGTGCCAACTGATCGCCGCGATGAATCCGT
GCCCGTGCGGCTGGCGCGGCGACCCGGGCGGCCGCTGCCGCTGCTCGCCCGACATCGCCGCGCGCTATCTGCGCAAGCTG
TCCGGGCCGCTCCTCGACCGGATCGACATCCAGATCGAGATTCCCGCGCTCACGCCCGCCGAGCTGGCCGAGCGGCCGGC
GGCCGCCGGCGAATCGAGCGAAACCGTGGCCGCGCGCGTCGCGCTCGCGCGCGAGCGGCAATTCGCGAGGCAGCGCAAGA
CCAACCACATGCTGACGGGCCGCGAGACCGATACGCTCTGCCGCCCGGACAGCGCGGGCGAGACGCTGCTGCGCGACGCG
GGCGAGCGGTTCCGCTGGTCGGCGCGCGCGTACTACCGCGTGCTGAAGGTCGCGCGGACGATCGCGGACCTCGCGGGCGA
CGACGCGCCGAGCGCCGCGCATATCGCCGAGGCGATCCGGTATCGACGGGCGTTCGCGCCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-421)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.237

99.242

0.489
  comM Vibrio campbellii strain DS40M4

47.51

98.864

0.47
  comM Haemophilus influenzae Rd KW20

47.036

99.053

0.466
  comM Legionella pneumophila str. Paris

46.476

99.432

0.462
  comM Legionella pneumophila strain ERS1305867

46.476

99.432

0.462
  comM Glaesserella parasuis strain SC1401

46.552

98.864

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.967

98.295

0.422

Multiple sequence alignment