Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6973_RS10675 Genome accession   NZ_CP082206
Coordinates   2164308..2164901 (-) Length   197 a.a.
NCBI ID   WP_129556363.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2159308..2169901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS10645 (K6973_10645) - 2159661..2159930 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  K6973_RS10650 (K6973_10650) spx 2160042..2160440 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  K6973_RS10655 (K6973_10655) recA 2160734..2161870 (-) 1137 WP_003058758.1 recombinase RecA Machinery gene
  K6973_RS10660 (K6973_10660) cinA 2161975..2163246 (-) 1272 WP_143928078.1 competence/damage-inducible protein A Machinery gene
  K6973_RS10665 (K6973_10665) - 2163370..2163723 (-) 354 WP_222819388.1 VOC family protein -
  K6973_RS10670 (K6973_10670) - 2163726..2164298 (-) 573 WP_138126794.1 DNA-3-methyladenine glycosylase I -
  K6973_RS10675 (K6973_10675) ruvA 2164308..2164901 (-) 594 WP_129556363.1 Holliday junction branch migration protein RuvA Machinery gene
  K6973_RS10680 (K6973_10680) - 2164903..2166123 (-) 1221 WP_222819389.1 MFS transporter -
  K6973_RS10685 (K6973_10685) hexB 2166134..2168116 (-) 1983 WP_222819390.1 DNA mismatch repair endonuclease MutL Machinery gene
  K6973_RS10690 (K6973_10690) - 2168211..2169362 (-) 1152 WP_222819391.1 site-specific integrase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21727.97 Da        Isoelectric Point: 5.7322

>NTDB_id=527503 K6973_RS10675 WP_129556363.1 2164308..2164901(-) (ruvA) [Streptococcus dysgalactiae strain DY107]
MYDYIKGQLTKITAKYIVVESNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAKPSTSSNNDQLDEAIEALL
ALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=527503 K6973_RS10675 WP_129556363.1 2164308..2164901(-) (ruvA) [Streptococcus dysgalactiae strain DY107]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAAGCAACGGACTGGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGACGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACCTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACCAGTAAAGCAAAACCGTCTACCTCCTCAAACAATGACCAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTACAAAGCAACAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(150-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.513

100

0.675
  ruvA Streptococcus pneumoniae R6

67.513

100

0.675
  ruvA Streptococcus pneumoniae D39

67.513

100

0.675
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406