Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   I6I43_RS06190 Genome accession   NZ_CP068143
Coordinates   1203673..1204743 (+) Length   356 a.a.
NCBI ID   WP_201802273.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_1086     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198673..1209743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I43_RS06160 (I6I43_06160) - 1199096..1200559 (+) 1464 WP_001017867.1 rhomboid family protein -
  I6I43_RS06165 (I6I43_06165) - 1200540..1200743 (+) 204 WP_000087561.1 YqgQ family protein -
  I6I43_RS06170 (I6I43_06170) - 1200740..1201726 (+) 987 WP_000161314.1 ROK family glucokinase -
  I6I43_RS06175 (I6I43_06175) - 1201726..1202055 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  I6I43_RS06180 (I6I43_06180) - 1202052..1202675 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  I6I43_RS06185 (I6I43_06185) comGA 1202727..1203701 (+) 975 WP_069995863.1 competence type IV pilus ATPase ComGA Machinery gene
  I6I43_RS06190 (I6I43_06190) comGB 1203673..1204743 (+) 1071 WP_201802273.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6I43_RS06195 (I6I43_06195) comGC 1204757..1205068 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  I6I43_RS06200 (I6I43_06200) comGD 1205046..1205492 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6I43_RS06205 (I6I43_06205) comGE 1205479..1205778 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  I6I43_RS06210 (I6I43_06210) comGF 1205696..1206193 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6I43_RS06215 (I6I43_06215) - 1206290..1206436 (+) 147 WP_001789879.1 hypothetical protein -
  I6I43_RS06220 (I6I43_06220) - 1206426..1206950 (+) 525 WP_001015121.1 shikimate kinase -
  I6I43_RS06225 (I6I43_06225) gcvT 1207109..1208200 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  I6I43_RS06230 (I6I43_06230) gcvPA 1208220..1209566 (+) 1347 WP_045177127.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41457.80 Da        Isoelectric Point: 9.9594

>NTDB_id=527502 I6I43_RS06190 WP_201802273.1 1203673..1204743(+) (comGB) [Staphylococcus aureus strain FDAARGOS_1086]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPHILEKLKCFKPQLIKFVLQGEKRGELEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=527502 I6I43_RS06190 WP_201802273.1 1203673..1204743(+) (comGB) [Staphylococcus aureus strain FDAARGOS_1086]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATATCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCATATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGGAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994