Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K6969_RS09060 Genome accession   NZ_CP082205
Coordinates   1889211..1889945 (-) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis strain AKJ18     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884211..1894945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS09035 (K6969_08925) scnR 1884655..1885305 (-) 651 WP_024376704.1 response regulator transcription factor Regulator
  K6969_RS09040 (K6969_08930) - 1885534..1886235 (+) 702 WP_015647212.1 CPBP family intramembrane glutamic endopeptidase -
  K6969_RS09045 (K6969_08935) - 1886488..1886973 (-) 486 WP_171942559.1 hypothetical protein -
  K6969_RS09050 (K6969_08940) - 1887216..1887788 (-) 573 WP_171942558.1 hypothetical protein -
  K6969_RS12395 (K6969_08945) - 1887748..1887888 (-) 141 WP_079267632.1 YSIRK-type signal peptide-containing protein -
  K6969_RS09055 (K6969_08950) - 1888129..1888977 (-) 849 WP_029174040.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  K6969_RS09060 (K6969_08955) amiE 1889211..1889945 (-) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  K6969_RS09065 (K6969_08960) - 1889938..1890627 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  K6969_RS09070 (K6969_08965) - 1890753..1890983 (-) 231 WP_002938704.1 DUF1797 family protein -
  K6969_RS09075 (K6969_08970) clpE 1891207..1893435 (+) 2229 WP_029174039.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  K6969_RS09080 (K6969_08975) - 1893621..1894082 (+) 462 WP_029174038.1 NUDIX hydrolase -
  K6969_RS09085 (K6969_08980) - 1894137..1894445 (+) 309 WP_002938710.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=527368 K6969_RS09060 WP_002943067.1 1889211..1889945(-) (amiE) [Streptococcus suis strain AKJ18]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=527368 K6969_RS09060 WP_002943067.1 1889211..1889945(-) (amiE) [Streptococcus suis strain AKJ18]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTTGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTACCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCAAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGTCTTTCAGGTGGTCAGCAACAGCGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGATCCTGAAATGGTTGGTGAAGTTCTTGCTGTTATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365