Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PCC21_RS19915 Genome accession   NC_018525
Coordinates   4549482..4551008 (+) Length   508 a.a.
NCBI ID   WP_014916972.1    Uniprot ID   -
Organism   Pectobacterium carotovorum subsp. carotovorum PCC21     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4544482..4556008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC21_RS19900 (PCC21_040100) - 4545919..4546845 (-) 927 WP_014916970.1 branched-chain amino acid transaminase -
  PCC21_RS19905 (PCC21_040110) ilvM 4546871..4547131 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  PCC21_RS19910 (PCC21_040120) ilvG 4547189..4548835 (-) 1647 WP_043901925.1 acetolactate synthase 2 catalytic subunit -
  PCC21_RS21875 ilvL 4548976..4549074 (-) 99 WP_071531109.1 ilv operon leader peptide -
  PCC21_RS19915 (PCC21_040130) comM 4549482..4551008 (+) 1527 WP_014916972.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PCC21_RS19920 (PCC21_040140) - 4551066..4551404 (-) 339 WP_014916973.1 DUF413 domain-containing protein -
  PCC21_RS19925 (PCC21_040150) hdfR 4551525..4552352 (+) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  PCC21_RS19930 (PCC21_040160) yjfF 4552374..4553336 (-) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  PCC21_RS19935 (PCC21_040170) ytfT 4553336..4554346 (-) 1011 WP_010283927.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  PCC21_RS19940 (PCC21_040180) ytfR 4554336..4555853 (-) 1518 WP_014916975.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55498.18 Da        Isoelectric Point: 6.6907

>NTDB_id=52720 PCC21_RS19915 WP_014916972.1 4549482..4551008(+) (comM) [Pectobacterium carotovorum subsp. carotovorum PCC21]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=52720 PCC21_RS19915 WP_014916972.1 4549482..4551008(+) (comM) [Pectobacterium carotovorum subsp. carotovorum PCC21]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
CGGGCTACCGGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCACA
ACTTGCTCTTGCTAGGGCCTCCGGGAACGGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTATGCTATCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGTGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTTGCGCGCACGATCGCTGACCTCGGCGGTCGGGAT
AATATTGAAAGAAAACATCTTGCCGAAGCTCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.214

100

0.469

Multiple sequence alignment