Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   K6976_RS00770 Genome accession   NZ_CP082202
Coordinates   123694..124101 (+) Length   135 a.a.
NCBI ID   WP_222759617.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118694..129101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS00745 (K6976_00745) - 120093..120467 (+) 375 WP_024385120.1 DUF1033 family protein -
  K6976_RS00750 (K6976_00750) - 120495..121445 (-) 951 WP_222759611.1 S66 peptidase family protein -
  K6976_RS00755 (K6976_00755) comGA 121531..122481 (+) 951 WP_222759613.1 competence type IV pilus ATPase ComGA Machinery gene
  K6976_RS00760 (K6976_00760) comGB 122393..123430 (+) 1038 WP_261988003.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6976_RS00765 (K6976_00765) comGC 123432..123713 (+) 282 WP_222759615.1 competence type IV pilus major pilin ComGC Machinery gene
  K6976_RS00770 (K6976_00770) comGD 123694..124101 (+) 408 WP_222759617.1 competence type IV pilus minor pilin ComGD Machinery gene
  K6976_RS00775 (K6976_00775) comGE 124073..124366 (+) 294 WP_172099849.1 competence type IV pilus minor pilin ComGE Machinery gene
  K6976_RS00780 (K6976_00780) comGF/cglF 124353..124787 (+) 435 WP_222759618.1 competence type IV pilus minor pilin ComGF Machinery gene
  K6976_RS00785 (K6976_00785) comGG 124765..125283 (+) 519 WP_222759619.1 competence type IV pilus minor pilin ComGG -
  K6976_RS00790 (K6976_00790) comGH 125337..126290 (+) 954 WP_222759621.1 class I SAM-dependent methyltransferase Machinery gene
  K6976_RS00795 (K6976_00795) - 126340..127527 (+) 1188 WP_222759623.1 acetate kinase -
  K6976_RS00800 (K6976_00800) - 127956..128507 (+) 552 WP_105127996.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15334.44 Da        Isoelectric Point: 7.2029

>NTDB_id=527016 K6976_RS00770 WP_222759617.1 123694..124101(+) (comGD) [Streptococcus suis strain SS389]
MLRRKNKAFTLLESLLTLFVVSFLAVSLSGTVQTVFQSVQEEIFLWEFEAIYKDSQKLAASSHQTVNLSIGGQEVTNGHQ
AVEVPRNVEVLEEKTIQFEENGGNSSLSRIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=527016 K6976_RS00770 WP_222759617.1 123694..124101(+) (comGD) [Streptococcus suis strain SS389]
ATGTTACGGCGAAAAAATAAGGCCTTCACTCTTCTGGAAAGCCTGCTGACCTTATTTGTCGTTAGTTTTTTAGCCGTTTC
TTTGTCGGGAACGGTGCAAACAGTCTTTCAGTCAGTTCAAGAAGAAATTTTCCTCTGGGAATTTGAAGCCATCTACAAAG
ATAGTCAGAAGTTGGCAGCCAGTTCCCACCAAACAGTGAATCTTTCTATCGGTGGACAGGAAGTGACAAATGGTCATCAG
GCTGTAGAGGTGCCCAGAAACGTAGAGGTCTTAGAGGAGAAAACTATTCAGTTTGAAGAAAATGGAGGAAATTCCTCACT
GTCTAGAATTCGTTTTCGGCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus pneumoniae R6

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae D39

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae TIGR4

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae Rx1

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

44.186

95.556

0.422
  comGD/cglD Streptococcus mitis SK321

43.411

95.556

0.415
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363