Detailed information NTG0527004

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: K6976_RS00355
• Genome accession: NZ_CP082202
• Coordinates: 59118..60116 (+)
• Length: 332 a.a.
• NCBI ID: WP_222759588.1
• Uniprot ID: -
• Organism: Streptococcus suis strain SS389
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 54118..65116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6976_RS00330 (K6976_00330)	-	55589..55762 (+)	174	WP_222759581.1	hypothetical protein	-
K6976_RS00335 (K6976_00335)	-	56040..56909 (-)	870	WP_222759582.1	cysteine ABC transporter substrate-binding protein	-
K6976_RS00340 (K6976_00340)	-	56922..57668 (-)	747	WP_222759584.1	amino acid ABC transporter ATP-binding protein	-
K6976_RS00345 (K6976_00345)	-	57673..58350 (-)	678	WP_222759586.1	amino acid ABC transporter permease	-
K6976_RS00350 (K6976_00350)	-	58331..58990 (-)	660	WP_074391045.1	amino acid ABC transporter permease	-
K6976_RS00355 (K6976_00355)	ruvB	59118..60116 (+)	999	WP_222759588.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
K6976_RS00360 (K6976_00360)	-	60128..60862 (+)	735	WP_222759590.1	GNAT family N-acetyltransferase	-
K6976_RS00365 (K6976_00365)	-	60864..61499 (+)	636	WP_222759592.1	HAD-IA family hydrolase	-
K6976_RS00370 (K6976_00370)	tnpA	61514..61895 (+)	382	Protein_54	IS200/IS605 family transposase	-
K6976_RS00375 (K6976_00375)	comR	62109..63008 (+)	900	WP_141597428.1	helix-turn-helix domain-containing protein	Regulator
K6976_RS00380 (K6976_00380)	-	63216..64436 (+)	1221	WP_222759593.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37484.99 Da
• Isoelectric Point: 4.4673

>NTDB_id=527004 K6976_RS00355 WP_222759588.1 59118..60116(+) (ruvB) [Streptococcus suis strain SS389]
MSRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNI
KQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLID
DSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATAK
AYEHLGYPYTEK

Nucleotide

• Length: 999 bp

>NTDB_id=527004 K6976_RS00355 WP_222759588.1 59118..60116(+) (ruvB) [Streptococcus suis strain SS389]
ATGAGTAGAATTTTAGACATGGAACAAATGCAGGACGAGGAATACGTTGAGCGTACCCTGCGTCCGCAGAAATTAAATGA
ATACATCGGTCAGGACAAGGTCAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAACTCCGTGATGAAGCCTTGGACC
ATACGCTTCTTTTTGGTCCTCCAGGTCTGGGTAAGACCACCATGGCCTTTGTCATTGCCAACGAACTAGGGGTGAATATC
AAGCAGACCAGTGGTCCCGTCATTGAAAAGGCAGGCGATTTGGTGGCCCTTCTCAACGATTTGGAGCCAGGCGATGTCCT
CTTTATCGATGAAATCCACCGTATGCCCATGGCGGTTGAGGAGATTCTCTACTCTGCCATGGAAGATTTTTACATTGACA
TCATGATTGGGGCTGGGGAGGCCAGTCGCTCTGTGCATCTGGAGTTGCCTCCTTTTACCCTGATTGGAGCAACCACTCGT
GCGGGGATGCTGTCCAATCCCCTGCGGGCTCGTTTTGGTATCACCGGTCACATGGAGTATTATGAACTGGCTGATTTGAC
CGAGATTGTCGAGCGGACAGCGGATATCTTTGACATGGAGATTACCCATGAAGCAGCTATCGAGCTGGCTCGTCGTTCCC
GCGGAACTCCACGTATTGCCAACCGCCTGCTCAAGCGGGTGCGGGATTTTGCACAGATTATGGGCGACGGCCTGATTGAC
GATAGCATTACGGACAAGGCTCTGACCATGCTGGACGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCTTCG
GACCATGATTGAGATGTATGGCGGCGGTCCTGTCGGCCTCAACACCCTGTCGGTCAATATCGCCGAGGAGCGTGAAACAG
TGGAGGATATGTACGAGCCTTACCTGATTCAGCAGGGCTTTCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCCAAG
GCCTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.663	100	0.907
ruvB	Streptococcus pneumoniae R6	90.361	100	0.904
ruvB	Streptococcus pneumoniae D39	90.361	100	0.904
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.824	97.289	0.572
ruvB	Helicobacter pylori 26695	51.227	98.193	0.503
ruvB	Synechocystis sp. PCC 6803	50.479	94.277	0.476