Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I6J07_RS04240 Genome accession   NZ_CP068063
Coordinates   823200..823517 (+) Length   105 a.a.
NCBI ID   WP_276307628.1    Uniprot ID   -
Organism   Staphylococcus equorum strain FDAARGOS_1150     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 818200..828517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J07_RS04210 (I6J07_04215) - 818338..818538 (+) 201 WP_002512453.1 YqgQ family protein -
  I6J07_RS04215 (I6J07_04220) - 819128..820114 (+) 987 WP_002507500.1 glucokinase -
  I6J07_RS04220 (I6J07_04225) - 820114..820437 (+) 324 WP_002507501.1 MTH1187 family thiamine-binding protein -
  I6J07_RS04225 (I6J07_04230) - 820439..821062 (+) 624 WP_002507502.1 MBL fold metallo-hydrolase -
  I6J07_RS04230 (I6J07_04235) comGA 821162..822136 (+) 975 WP_103170369.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J07_RS04235 (I6J07_04240) comGB 822108..823175 (+) 1068 WP_103170368.1 competence type IV pilus assembly protein ComGB -
  I6J07_RS04240 (I6J07_04245) comGC 823200..823517 (+) 318 WP_276307628.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J07_RS04245 (I6J07_04250) - 823540..823941 (+) 402 WP_103170381.1 competence protein -
  I6J07_RS04250 (I6J07_04255) - 823928..824227 (+) 300 WP_002507507.1 hypothetical protein -
  I6J07_RS04255 (I6J07_04260) comGF 824199..824642 (+) 444 WP_002507508.1 competence type IV pilus minor pilin ComGF -
  I6J07_RS04260 (I6J07_04265) - 824849..825322 (+) 474 WP_230456625.1 shikimate kinase -
  I6J07_RS04265 (I6J07_04270) gcvT 825501..826592 (+) 1092 WP_002507510.1 glycine cleavage system aminomethyltransferase GcvT -
  I6J07_RS04270 (I6J07_04275) gcvPA 826610..827962 (+) 1353 WP_069818652.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11713.77 Da        Isoelectric Point: 8.4835

>NTDB_id=526876 I6J07_RS04240 WP_276307628.1 823200..823517(+) (comGC) [Staphylococcus equorum strain FDAARGOS_1150]
MKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMIDSQIEAYSLKYNKKPTSIDELVSEG
YINESQKRCKTSSTISINNGEAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=526876 I6J07_RS04240 WP_276307628.1 823200..823517(+) (comGC) [Staphylococcus equorum strain FDAARGOS_1150]
TTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAATCATAAGTTT
ATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTCAAATAAAAA
TGATAGACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTCTCAGAAGGA
TATATTAACGAAAGTCAAAAGCGATGTAAAACTAGTTCAACAATTTCAATAAATAATGGTGAAGCGGTTGCTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

67.647

97.143

0.657
  comGC Staphylococcus aureus MW2

67.647

97.143

0.657
  comYC Streptococcus gordonii str. Challis substr. CH1

44.444

100

0.457
  comGC/cglC Streptococcus mitis NCTC 12261

41.053

90.476

0.371
  comGC Bacillus subtilis subsp. subtilis str. 168

40.426

89.524

0.362
  comYC Streptococcus mutans UA140

44.186

81.905

0.362
  comYC Streptococcus mutans UA159

44.186

81.905

0.362