Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6J12_RS07390 Genome accession   NZ_CP068060
Coordinates   1552422..1553348 (-) Length   308 a.a.
NCBI ID   WP_003035531.1    Uniprot ID   I0SFJ9
Organism   Streptococcus anginosus strain FDAARGOS_1155     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547422..1558348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J12_RS07370 (I6J12_07370) - 1548364..1549329 (+) 966 WP_003035453.1 LacI family DNA-binding transcriptional regulator -
  I6J12_RS07375 (I6J12_07375) - 1549402..1550226 (-) 825 WP_003035518.1 Cof-type HAD-IIB family hydrolase -
  I6J12_RS07380 (I6J12_07380) amiF 1550412..1551335 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  I6J12_RS07385 (I6J12_07385) amiE 1551346..1552413 (-) 1068 WP_003035549.1 ABC transporter ATP-binding protein Regulator
  I6J12_RS07390 (I6J12_07390) amiD 1552422..1553348 (-) 927 WP_003035531.1 oligopeptide ABC transporter permease OppC Regulator
  I6J12_RS07395 (I6J12_07395) amiC 1553348..1554844 (-) 1497 WP_003035572.1 ABC transporter permease Regulator
  I6J12_RS07400 (I6J12_07400) amiA3 1555221..1557200 (-) 1980 WP_003035474.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34470.50 Da        Isoelectric Point: 9.7392

>NTDB_id=526807 I6J12_RS07390 WP_003035531.1 1552422..1553348(-) (amiD) [Streptococcus anginosus strain FDAARGOS_1155]
MATIDKTKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTVIMLGILVAIILMSFIYPIFSDFDFNDVSKVNDFGAR
YIKPNGQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQILRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=526807 I6J12_RS07390 WP_003035531.1 1552422..1553348(-) (amiD) [Streptococcus anginosus strain FDAARGOS_1155]
ATGGCTACAATTGATAAGACTAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAACAATTGATGCTCCAGCCTA
TTCTTACTGGAAGTCAGTTATGCGTCAGTTCCTAAAAAAGAAATCAACAGTTATCATGTTGGGAATTTTGGTCGCTATTA
TTTTGATGAGTTTCATTTATCCGATTTTCTCAGATTTTGACTTTAACGATGTCAGCAAGGTGAATGATTTCGGTGCGCGT
TATATTAAACCAAACGGTCAATATTGGTTTGGTACAGATAGCAACGGGAAATCTCTTTTTGACGGAGTATGGTTTGGAGC
TCGTAACTCCATCCTCATTTCTGTCATTGCAACCGTGATTAACTTAGTTATTGGTATTGTGATTGGTGGTATCTGGGGAA
TTTCAAAAACCGTTGACCGTATCATGATGGAAGTGTACAATATCATTTCTAACATCCCATCTCTCTTGATTGTCATTGTC
TTGACTTATTCAATTGGTGCTGGTTTCTGGAACTTGATTTTTGCTATGACCATCACAGGTTGGGTTGGGATTGCTTATAC
GATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACATTGGGAACGCCAACGCTTAAAA
TTATTGTGAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTTACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCTTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCTCTTTCATTGTTCGTTG
TCGGTCAAAACTTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SFJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.688

100

0.867
  amiD Streptococcus thermophilus LMG 18311

84.74

100

0.847
  amiD Streptococcus thermophilus LMD-9

84.74

100

0.847