Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6J12_RS07380 Genome accession   NZ_CP068060
Coordinates   1550412..1551335 (-) Length   307 a.a.
NCBI ID   WP_003031730.1    Uniprot ID   I0SFK8
Organism   Streptococcus anginosus strain FDAARGOS_1155     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545412..1556335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J12_RS07365 (I6J12_07365) - 1546926..1548383 (+) 1458 WP_003035449.1 sucrose-6-phosphate hydrolase -
  I6J12_RS07370 (I6J12_07370) - 1548364..1549329 (+) 966 WP_003035453.1 LacI family DNA-binding transcriptional regulator -
  I6J12_RS07375 (I6J12_07375) - 1549402..1550226 (-) 825 WP_003035518.1 Cof-type HAD-IIB family hydrolase -
  I6J12_RS07380 (I6J12_07380) amiF 1550412..1551335 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  I6J12_RS07385 (I6J12_07385) amiE 1551346..1552413 (-) 1068 WP_003035549.1 ABC transporter ATP-binding protein Regulator
  I6J12_RS07390 (I6J12_07390) amiD 1552422..1553348 (-) 927 WP_003035531.1 oligopeptide ABC transporter permease OppC Regulator
  I6J12_RS07395 (I6J12_07395) amiC 1553348..1554844 (-) 1497 WP_003035572.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34802.03 Da        Isoelectric Point: 6.4261

>NTDB_id=526805 I6J12_RS07380 WP_003031730.1 1550412..1551335(-) (amiF) [Streptococcus anginosus strain FDAARGOS_1155]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSHGEIFFEGKKINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERKKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDAAQHDYSVDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=526805 I6J12_RS07380 WP_003031730.1 1550412..1551335(-) (amiF) [Streptococcus anginosus strain FDAARGOS_1155]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCTTTCGGTGAGGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCTGGTTCTGGTAAAACGACAATTGGTCGTG
CGATTATTGGTTTAAATGATACGAGTCATGGAGAGATTTTCTTTGAAGGGAAAAAAATCAATGGCAAAAAATCAAAAGAA
GAAGAGTCAGAAATCATTCGTAAAATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATCATTTCGGAAGGCTTGTATAATTTCCATTTATTTAAAGATGAAGAAGAACGCAAGAAAAAAGTGAAAGATATTA
TTCATGAAGTTGGATTGTTATCAGAGCATTTAACACGTTACCCGCATGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCCCGTGCGCTTGTTATGGAACCAGATTTTGTCATTGCAGATGAGCCGATTTCAGCTTTGGACGTGTCTGTGCGCGC
GCAAGTTTTGAATCTTCTTAAGAAATTCCAAAAAGATCTAGGTTTGACCTATCTTTTCATTGCCCATGATTTATCAGTTG
TACGTTTTATCTCAGACCGTATTGCTGTTATTTATAAGGGTGTGATTGTAGAAGTGGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACGCAGTCATTGCTATCTGCTGTCCCAATTCCAGACCCAATATTGGAGCGGAAGAAAGTATT
GAAGGTTTATGATGCTGCTCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCAGGACACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SFK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.908

99.674

0.876
  amiF Streptococcus salivarius strain HSISS4

87.908

99.674

0.876
  amiF Streptococcus thermophilus LMD-9

87.582

99.674

0.873