Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JKJ11_RS16655 Genome accession   NZ_CP068024
Coordinates   3564282..3565805 (-) Length   507 a.a.
NCBI ID   WP_252038578.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3559282..3570805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS16630 (JKJ11_16650) - 3559416..3560399 (+) 984 WP_198558518.1 serine/threonine protein kinase -
  JKJ11_RS16635 (JKJ11_16655) - 3560451..3561050 (+) 600 WP_031493306.1 thiol:disulfide interchange protein DsbA/DsbL -
  JKJ11_RS16640 (JKJ11_16660) - 3561097..3561981 (-) 885 WP_006073014.1 acyltransferase -
  JKJ11_RS16645 (JKJ11_16665) - 3562181..3563167 (+) 987 WP_252038575.1 DUF2860 domain-containing protein -
  JKJ11_RS16650 (JKJ11_16670) - 3563311..3564285 (+) 975 WP_252038576.1 DUF2860 family protein -
  JKJ11_RS16655 (JKJ11_16675) comM 3564282..3565805 (-) 1524 WP_252038578.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JKJ11_RS16660 (JKJ11_16680) ilvG 3566289..3567935 (+) 1647 WP_252038580.1 acetolactate synthase 2 catalytic subunit -
  JKJ11_RS16665 (JKJ11_16685) ilvM 3567935..3568216 (+) 282 WP_006073039.1 acetolactate synthase 2 small subunit -
  JKJ11_RS16670 (JKJ11_16690) - 3568231..3569184 (+) 954 WP_006073040.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55428.56 Da        Isoelectric Point: 8.1829

>NTDB_id=526353 JKJ11_RS16655 WP_252038578.1 3564282..3565805(-) (comM) [Vibrio sp. SCSIO 43133]
MGLSIIYSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQLPHDKLLSHEFVGELALSGELRVVKGVLPAALAANKSRRCLVVPEGNGNQAALVGREHHRSASGL
LDVCAYLMGQQALSLYTDTKQIKMVPKTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSE
QEAMETASVASLTQQEINEDNWKTRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRTNPQLILRYLSRLSGPLLDRFDMSIEIPSLPKGTLSEGGER
GESTQVVRQRVHRARDVMLSRNGKVNALLHSGEIEDYCRLKKTDAEFLENALHRLGLSVRAYHRIIKVARTIADLGGEDD
IQREHLAEALGYRAIDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=526353 JKJ11_RS16655 WP_252038578.1 3564282..3565805(-) (comM) [Vibrio sp. SCSIO 43133]
ATGGGATTATCGATTATTTATAGTCGAGCGAGCGTTGGTGTTGAAGCTCCTTTGGTTACGGTTGAAGTCCACATCAGTAA
TGGTATGCCCGGTTTTACACTGGTAGGACTTCCAGAGACGACAGTTAAGGAATCTAAAGATCGAGTACGTAGTGCCATCA
TCAATTCACGATTTGAGTTTCCGGCGAAGAGAATCACGGTGAACCTCGCTCCTGCGGATCTGCCTAAAGAGGGGGGGCGA
TTTGATCTTCCTATTGCGTTAGGTATTTTGGCGGCGTCTGATCAGTTACCTCACGATAAGCTACTCTCACATGAATTTGT
TGGCGAGCTAGCGCTTTCTGGAGAGCTAAGAGTCGTCAAAGGTGTTTTACCTGCTGCACTCGCCGCTAACAAAAGCCGTC
GATGCTTAGTGGTGCCAGAAGGTAATGGTAATCAGGCGGCGTTGGTTGGCCGAGAGCACCATAGATCAGCATCAGGTCTA
CTCGATGTCTGTGCGTATTTGATGGGCCAACAAGCTTTATCCCTATATACCGACACTAAACAGATAAAGATGGTGCCGAA
AACACGCGATTTACAGGATATCATCGGCCAACAACAGGGAAAGCGAGCTTTAGAGATTGCCGCAGCCGGAAATCACAACC
TACTCTTTCTCGGTCCTCCTGGAACCGGAAAAACCATGTTGGCCTCACGGCTTTGCGACCTATTACCTGAAATGAGCGAA
CAAGAAGCGATGGAAACTGCCTCGGTCGCGTCGTTGACGCAGCAAGAAATCAATGAAGACAATTGGAAAACGCGGCCTTT
TCGTGCCCCTCATCATTCGAGTTCTATGGCTGCATTAGTTGGCGGAGGTTCGATACCAAGACCAGGAGAAATTTCTCTGG
CACATAATGGGTTACTATTCCTCGACGAAATGCCTGAATTTGAAAGAAAAGTCTTGGACTCACTTCGAGAGCCGCTTGAG
TCAGGCGAAATTATTATTTCTCGAGCCCAAGGGAAAACCCGTTTTCCAGCTCGATTCCAACTCGTCGGCGCATTGAACCC
GAGTCCTACTGGGTACTATGAAGGCAATCAGTCACGTACCAATCCTCAGCTAATTCTACGCTACCTCAGTCGATTATCGG
GGCCTTTGCTCGACCGATTTGATATGTCGATTGAAATACCTTCATTACCCAAAGGCACATTGTCTGAAGGGGGAGAGCGA
GGGGAGTCAACTCAAGTCGTGCGTCAGCGTGTTCATCGAGCGCGTGATGTGATGTTAAGTCGCAATGGTAAGGTGAATGC
ACTCCTTCACAGCGGTGAAATCGAGGACTATTGTCGCTTAAAGAAAACAGATGCAGAGTTTCTTGAGAATGCTCTACACC
GTTTAGGGCTCTCTGTTCGCGCCTATCATCGAATTATCAAAGTAGCACGTACTATTGCTGATCTTGGCGGTGAGGATGAT
ATTCAAAGAGAACATTTAGCTGAAGCGTTAGGATATCGCGCTATAGATAGGTTACTAAAACAATTGACTGCGCAAGCGGT
TTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

84.024

100

0.84
  comM Vibrio campbellii strain DS40M4

83.629

100

0.836
  comM Haemophilus influenzae Rd KW20

66.864

100

0.669
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

99.606

0.438