Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JKJ11_RS02550 Genome accession   NZ_CP068024
Coordinates   495444..495995 (+) Length   183 a.a.
NCBI ID   WP_006070982.1    Uniprot ID   A0A084T6G5
Organism   Vibrio sp. SCSIO 43133     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 490444..500995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS02535 (JKJ11_02535) uvrA 490501..493329 (-) 2829 WP_252038705.1 excinuclease ABC subunit UvrA -
  JKJ11_RS02540 (JKJ11_02540) galU 493488..494357 (-) 870 WP_006070978.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JKJ11_RS02545 (JKJ11_02545) qstR 494533..495183 (-) 651 WP_006070980.1 LuxR C-terminal-related transcriptional regulator Regulator
  JKJ11_RS02550 (JKJ11_02550) ssb 495444..495995 (+) 552 WP_006070982.1 single-stranded DNA-binding protein Machinery gene
  JKJ11_RS02555 (JKJ11_02555) csrD 496259..498250 (+) 1992 WP_006070984.1 RNase E specificity factor CsrD -
  JKJ11_RS02560 (JKJ11_02560) - 498263..499771 (+) 1509 WP_124940614.1 MSHA biogenesis protein MshI -
  JKJ11_RS02565 (JKJ11_02565) gspM 499768..500418 (+) 651 WP_124940615.1 type II secretion system protein GspM -
  JKJ11_RS02570 (JKJ11_02570) - 500411..500737 (+) 327 WP_038229124.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20119.39 Da        Isoelectric Point: 5.2358

>NTDB_id=526326 JKJ11_RS02550 WP_006070982.1 495444..495995(+) (ssb) [Vibrio sp. SCSIO 43133]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGGGAPMQGGMQGGMNQGGGMQQQAPQQQGWGQPQQPVQQPAQ
QKPAQQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=526326 JKJ11_RS02550 WP_006070982.1 495444..495995(+) (ssb) [Vibrio sp. SCSIO 43133]
ATGGCAAGCCGTGGAGTAAACAAAGTCATTCTAGTGGGTAACTTAGGTAACGACCCAGAAATTCGTTACATGCCAAACGG
CGGTGCCGTGGCGAATATTACAATCGCAACCTCTGAATCTTGGCGTGATAAAGCGACAGGCGAGCAGCGTGAAAAAACTG
AGTGGCACCGCGTTGCTCTGTTTGGCAAGCTAGCGGAAGTTGCTGGTGAATATCTGCGTAAGGGCTCTCAAGTTTATATT
GAAGGTCAACTGCAAACCCGTAAGTGGCAAGATCAAAGTGGTCAAGACCGCTACACAACGGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTAGGTGGCCGCCAAGGTGGTGGTGCTCCTATGCAGGGTGGTATGCAAGGCGGTATGAACC
AAGGTGGTGGCATGCAGCAGCAAGCTCCTCAACAACAGGGTTGGGGACAGCCTCAACAACCTGTACAACAACCAGCTCAG
CAAAAACCTGCTCAACAGCAGCCGCAGTACAATGAGCCACCAATGGACTTCGATGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084T6G5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

78.307

100

0.809
  ssb Glaesserella parasuis strain SC1401

58.73

100

0.607
  ssb Neisseria meningitidis MC58

42.857

100

0.459
  ssb Neisseria gonorrhoeae MS11

42.857

100

0.459