Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   JKJ11_RS02545 Genome accession   NZ_CP068024
Coordinates   494533..495183 (-) Length   216 a.a.
NCBI ID   WP_006070980.1    Uniprot ID   A0AAN1FGH1
Organism   Vibrio sp. SCSIO 43133     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 489533..500183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS02535 (JKJ11_02535) uvrA 490501..493329 (-) 2829 WP_252038705.1 excinuclease ABC subunit UvrA -
  JKJ11_RS02540 (JKJ11_02540) galU 493488..494357 (-) 870 WP_006070978.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JKJ11_RS02545 (JKJ11_02545) qstR 494533..495183 (-) 651 WP_006070980.1 LuxR C-terminal-related transcriptional regulator Regulator
  JKJ11_RS02550 (JKJ11_02550) ssb 495444..495995 (+) 552 WP_006070982.1 single-stranded DNA-binding protein Machinery gene
  JKJ11_RS02555 (JKJ11_02555) csrD 496259..498250 (+) 1992 WP_006070984.1 RNase E specificity factor CsrD -
  JKJ11_RS02560 (JKJ11_02560) - 498263..499771 (+) 1509 WP_124940614.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24778.38 Da        Isoelectric Point: 9.6085

>NTDB_id=526325 JKJ11_RS02545 WP_006070980.1 494533..495183(-) (qstR) [Vibrio sp. SCSIO 43133]
MRRNNYQRVIQHVTLNQEDSVTKRVKRLSHLSINAIEAITPQDLLSTTSGSRNRILLFDYEESLDLFQQVLNLPLASKNF
ETVLINVPHRLTTEEILRYGHIKGLFYSHEDAKKIVIGLGEIINGKNWLPREVTSQLLHHYRHVVSANTSPTVVDLTARE
IEILRCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=526325 JKJ11_RS02545 WP_006070980.1 494533..495183(-) (qstR) [Vibrio sp. SCSIO 43133]
ATGAGAAGAAATAATTACCAACGCGTCATTCAACATGTCACTCTTAATCAAGAGGACTCAGTTACCAAAAGGGTAAAGCG
CTTATCCCATCTAAGTATTAATGCTATTGAAGCCATCACTCCTCAGGATCTACTTTCAACCACCTCCGGTTCTCGTAATC
GTATTTTGCTCTTTGATTACGAAGAATCCTTAGATCTTTTCCAACAAGTGTTAAACCTGCCTTTAGCAAGCAAAAATTTT
GAGACCGTACTGATCAATGTTCCGCATCGGCTAACGACCGAGGAGATCCTTAGATATGGTCATATCAAAGGGCTCTTTTA
CAGCCACGAAGACGCTAAGAAAATCGTGATTGGTTTAGGAGAAATCATTAACGGCAAAAACTGGCTACCTCGAGAGGTAA
CCAGCCAACTGTTACATCACTATCGCCATGTGGTCTCAGCAAACACCTCTCCCACTGTGGTGGATTTGACAGCCAGAGAA
ATCGAGATTCTGCGGTGTCTGCAATCGGGAGCCAGCAACTTACAAATATCTGAAGACCTATTTATTACTGAATCCACAGT
AAAATCCCATCTTTATCAGGTATTTAGAAAACTTTCGGTAAAAAACCGCCTACAAGCGATAGCTTGGGCTAATCAAAACC
TTCTCTCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

52.752

100

0.532
  qstR Vibrio campbellii strain DS40M4

52.778

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.315

100

0.523