Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JJL53_RS18690 Genome accession   NZ_CP067417
Coordinates   4047375..4047695 (+) Length   106 a.a.
NCBI ID   WP_005327958.1    Uniprot ID   A0AAE6SNB8
Organism   Aeromonas media strain E31     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4042375..4052695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL53_RS18665 (JJL53_18665) trhA 4042957..4043592 (-) 636 WP_041205078.1 PAQR family membrane homeostasis protein TrhA -
  JJL53_RS18670 (JJL53_18670) - 4043824..4045356 (+) 1533 WP_005327951.1 aminotransferase class V-fold PLP-dependent enzyme -
  JJL53_RS18675 (JJL53_18675) - 4045491..4046042 (+) 552 WP_005327953.1 septation protein A -
  JJL53_RS18680 (JJL53_18680) - 4046066..4046362 (+) 297 WP_005327955.1 YciI family protein -
  JJL53_RS18685 (JJL53_18685) cysQ 4046454..4047209 (-) 756 WP_005327957.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  JJL53_RS18690 (JJL53_18690) comEA 4047375..4047695 (+) 321 WP_005327958.1 ComEA family DNA-binding protein Machinery gene
  JJL53_RS18695 (JJL53_18695) galU 4047790..4048701 (+) 912 WP_041205077.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JJL53_RS18700 (JJL53_18700) - 4049044..4050372 (+) 1329 WP_041205358.1 IS4-like element ISAeme12 family transposase -
  JJL53_RS18705 (JJL53_18705) - 4050373..4051749 (+) 1377 WP_201035510.1 peptide MFS transporter -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11007.85 Da        Isoelectric Point: 9.6573

>NTDB_id=526024 JJL53_RS18690 WP_005327958.1 4047375..4047695(+) (comEA) [Aeromonas media strain E31]
MNLKTLIAALLLSGLPLLSQPVLAADKPAAKPATTVTSAKEVGKINLNTASAAELAELKGIGEKKAQAIVDYREKQGKFT
SVDQLAEVSGIGPATLDANRDIIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=526024 JJL53_RS18690 WP_005327958.1 4047375..4047695(+) (comEA) [Aeromonas media strain E31]
ATGAACCTAAAGACCCTGATCGCCGCCCTGTTGCTGAGCGGACTGCCCCTGCTGAGCCAGCCTGTGCTCGCCGCCGACAA
GCCGGCGGCCAAGCCCGCCACGACCGTCACCAGCGCCAAGGAGGTTGGCAAGATCAACCTCAACACCGCCAGCGCAGCTG
AACTCGCGGAGCTGAAAGGGATCGGCGAGAAGAAGGCCCAGGCCATCGTCGACTATCGCGAGAAGCAGGGCAAGTTCACC
TCAGTGGATCAGCTGGCGGAGGTGAGCGGCATAGGGCCGGCCACCCTGGATGCAAATCGGGACATTATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

54

94.34

0.509
  comEA Vibrio cholerae strain A1552

54

94.34

0.509
  comE1/comEA Haemophilus influenzae Rd KW20

43.75

100

0.462
  comEA/comE1 Glaesserella parasuis strain SC1401

50

86.792

0.434
  comEA Legionella pneumophila str. Paris

44.118

96.226

0.425
  comEA Legionella pneumophila strain ERS1305867

44.118

96.226

0.425