Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JJL53_RS00555 Genome accession   NZ_CP067417
Coordinates   114826..116343 (-) Length   505 a.a.
NCBI ID   WP_041206603.1    Uniprot ID   -
Organism   Aeromonas media strain E31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 109826..121343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL53_RS00530 (JJL53_00530) - 110937..111572 (-) 636 WP_005323682.1 nicotinamidase -
  JJL53_RS00535 (JJL53_00535) - 111647..112297 (+) 651 WP_041206607.1 NUDIX hydrolase -
  JJL53_RS00540 (JJL53_00540) - 112406..112894 (+) 489 WP_041206606.1 DUF523 domain-containing protein -
  JJL53_RS00545 (JJL53_00545) - 112837..113784 (-) 948 WP_005323676.1 acyltransferase -
  JJL53_RS00550 (JJL53_00550) - 113794..114693 (-) 900 WP_005323674.1 acyltransferase -
  JJL53_RS00555 (JJL53_00555) comM 114826..116343 (-) 1518 WP_041206603.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JJL53_RS00560 (JJL53_00560) ilvG 116727..118373 (+) 1647 WP_005323672.1 acetolactate synthase 2 catalytic subunit -
  JJL53_RS00565 (JJL53_00565) ilvM 118370..118648 (+) 279 WP_041206600.1 acetolactate synthase 2 small subunit -
  JJL53_RS00570 (JJL53_00570) - 118661..119605 (+) 945 WP_201035298.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54837.80 Da        Isoelectric Point: 7.7056

>NTDB_id=526007 JJL53_RS00555 WP_041206603.1 114826..116343(-) (comM) [Aeromonas media strain E31]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKHLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDTLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSRQIRERVLGARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKEHLIEALGYRAMDRLLSRLRSGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=526007 JJL53_RS00555 WP_041206603.1 114826..116343(-) (comM) [Aeromonas media strain E31]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATTGCGGCGCCGCAAGTCACGGTGGAAGTCCATTTATCCAA
CGGACTGCCCGCCTTCAACATGGTGGGACTGCCGGAAACCTCGGTGAAAGAGTCGCGGGACAGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCCTCCAAGCACATCACGGTCAACCTGGCCCCTGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCCTCCAAGCAGATACCTGCAAAACACCTGCTCGATCACGAATTTTT
AGGGGAGCTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGCGACGCCGGGC
GTACCCTGCTGGTACCTCGGGAGAACGGCCCCGAGGCTTCCCTCATTCAGGACGCCGAAGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAGCTGCCCCTGCCGGAGCCCCAAACCACGGACACCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATAGGTCCACCCGGTACCGGCAAGAGCATGCTGGCGAGCCGCTTGCCCGGCATACTGCCGCCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGTCACTGGCATCACAGGCCCTATCG
CACGCCCCACCACAGTGCCTCAGCTGTGGCTTTAGTGGGGGGCGGCAGCCACCCGAGGCCAGGGGAAATATCCCTGGCCC
ACAACGGAGTGCTGTTTCTCGACGAGCTCCCCGAGTTCGAACGCAAGGTGCTCGACTCCCTGCGAGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGACTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTACGGGGACGGCCAGACCCGCTCCAGCCCGGATCAGATACTGCGCTACCTCGGCAAGCTCTCGGGCC
CCTTCCTCGATCGCTTCGATCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCTTGACCGGCAAGGCGGAGCGAGGG
GAGTCGAGCCGGCAGATCCGTGAGCGGGTGCTGGGCGCGCGGGAGCGCATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTGGATAGTCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGAGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATAGCGGATCTGGCGGGGCGCCCCGCCATC
GAGAAGGAGCATCTCATTGAGGCGCTCGGCTACAGGGCAATGGACCGGCTGCTGTCACGGCTGCGCAGCGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.406

0.628
  comM Vibrio campbellii strain DS40M4

62.351

99.406

0.62
  comM Haemophilus influenzae Rd KW20

61.858

100

0.62
  comM Glaesserella parasuis strain SC1401

60.158

100

0.604
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.365

100

0.467