Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JHW41_RS24350 Genome accession   NZ_CP067396
Coordinates   5827010..5828536 (+) Length   508 a.a.
NCBI ID   WP_250448127.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain CX06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5822010..5833536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW41_RS24330 (JHW41_24220) - 5823502..5824485 (-) 984 WP_284499551.1 YeiH family protein -
  JHW41_RS24335 (JHW41_24225) - 5824667..5825578 (+) 912 WP_250448125.1 LysR family transcriptional regulator -
  JHW41_RS24340 (JHW41_24230) - 5826050..5826388 (-) 339 WP_057945893.1 P-II family nitrogen regulator -
  JHW41_RS24345 (JHW41_24235) - 5826721..5826999 (+) 279 WP_057945892.1 accessory factor UbiK family protein -
  JHW41_RS24350 (JHW41_24240) comM 5827010..5828536 (+) 1527 WP_250448127.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JHW41_RS24355 (JHW41_24245) - 5828889..5829719 (+) 831 WP_057945890.1 AraC family transcriptional regulator -
  JHW41_RS24360 (JHW41_24250) - 5830115..5830270 (+) 156 WP_168356157.1 hypothetical protein -
  JHW41_RS24365 (JHW41_24255) - 5830276..5831157 (+) 882 WP_250448129.1 alpha/beta hydrolase -
  JHW41_RS24370 (JHW41_24260) - 5831290..5832300 (+) 1011 WP_250448131.1 alpha/beta hydrolase -
  JHW41_RS24375 (JHW41_24265) - 5832346..5833416 (-) 1071 WP_250448133.1 nitronate monooxygenase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54026.69 Da        Isoelectric Point: 8.5842

>NTDB_id=525879 JHW41_RS24350 WP_250448127.1 5827010..5828536(+) (comM) [Lysobacter enzymogenes strain CX06]
MNLALVHSRARTGVRAPAVRVEVHLGGGLPCMNIVGLPEAAVREAKDRVRAAIASAQYEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQLPLPALADCEFLGELGLTGELRAIDGVLPAALAAAEAGRRLVVPAGNGAEAALASRVEARTARTL
SEVCAMLCERASLPRAVAPPLARSPELDMRDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEDE
ALETAAIASVGGGGHGRALDPSRWRQRPFRAPHHTASAVALVGGGADPRPGEISLAHQGVLFLDELPEWERRALEVLREP
LESGAVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSARCRCTEDLIRRYRARISGPLLDRIDLHIEVPRLPPAALRP
DQPEGECSAAIRERVTAARQRQAERSGRTNSRLDQAQTNQHCRLGERDQALLERAVDGLQLSARSMHRILRVARTIADLA
DSANIGTAHLTEAIGYRRADRDSAARAS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=525879 JHW41_RS24350 WP_250448127.1 5827010..5828536(+) (comM) [Lysobacter enzymogenes strain CX06]
ATGAACCTGGCGCTCGTGCACAGCCGTGCGCGAACGGGGGTGCGTGCGCCGGCGGTACGCGTCGAAGTGCATCTGGGCGG
CGGCCTGCCGTGCATGAACATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAGGCCAAGGACCGGGTGCGCGCCGCGATCG
CCTCGGCGCAGTACGAATTCCCGCAACGACGCATCACCGTCAACCTCGCGCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TACGACCTCGCCATCGCGCTCGGCATCCTCGCCGCGAGCGGACAGCTGCCGCTGCCGGCGCTCGCCGATTGCGAGTTCCT
CGGCGAGCTCGGCCTCACCGGCGAGCTGCGCGCGATCGACGGCGTGCTGCCGGCGGCGCTGGCCGCGGCCGAGGCCGGCC
GCCGGCTGGTGGTGCCGGCCGGCAACGGCGCCGAAGCGGCGCTGGCCAGCCGGGTCGAGGCGCGCACCGCGCGCACGCTG
TCGGAGGTCTGCGCGATGCTGTGCGAACGCGCGTCGCTGCCGCGCGCCGTGGCCCCGCCGCTGGCGCGCTCGCCGGAACT
GGACATGCGCGACGTGCGCGGCCAGGCCCAGGCGCGACGCGCGCTGGAGATCGCCGCGGCCGGCGGCCACCATTTGTTGC
TGATCGGCCCGCCCGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCCGAGGCCAGCGAAGACGAA
GCGCTGGAAACCGCGGCGATCGCCTCGGTCGGCGGCGGCGGCCACGGCCGCGCGCTGGACCCGTCGCGCTGGCGCCAGCG
CCCGTTCCGCGCCCCGCACCACACCGCCAGCGCGGTCGCGCTGGTCGGCGGCGGCGCCGATCCGCGGCCCGGCGAGATAT
CGCTGGCGCACCAGGGCGTGCTGTTCCTCGATGAACTGCCCGAATGGGAGCGGCGCGCGCTGGAAGTGCTGCGCGAGCCG
CTGGAGTCGGGCGCGGTCACGGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCGGCGCGCTTCCAGTTGGTCGCGGCGAT
GAATCCCTGCCCCTGCGGCTGGGCCGGCGACAGCAGCGCGCGCTGCCGCTGCACCGAGGACCTCATCCGCCGCTACCGCG
CGCGCATCTCCGGCCCGCTGCTGGACCGCATCGACCTGCACATCGAAGTGCCGCGGCTGCCGCCGGCGGCGCTGCGCCCC
GACCAGCCCGAGGGCGAATGCAGCGCCGCGATCCGCGAACGCGTGACCGCCGCGCGGCAGCGCCAGGCCGAACGCAGCGG
CCGGACCAATTCGCGCCTCGATCAGGCCCAGACCAACCAGCATTGCCGCCTGGGCGAACGCGACCAGGCGCTGCTGGAAC
GCGCGGTCGACGGACTGCAGCTGTCGGCGCGCTCGATGCACCGGATCTTGCGGGTCGCGCGCACCATCGCCGATCTGGCC
GACAGCGCCAACATCGGCACCGCGCATTTGACCGAAGCCATCGGTTATCGGCGCGCGGATCGCGACAGCGCCGCGCGCGC
GTCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.473

99.016

0.539
  comM Vibrio campbellii strain DS40M4

52.767

99.606

0.526
  comM Glaesserella parasuis strain SC1401

52.165

100

0.522
  comM Haemophilus influenzae Rd KW20

52.286

99.016

0.518
  comM Legionella pneumophila str. Paris

51.697

98.622

0.51
  comM Legionella pneumophila strain ERS1305867

51.697

98.622

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.854

100

0.455