Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JHW38_RS15135 Genome accession   NZ_CP067395
Coordinates   3593486..3595012 (+) Length   508 a.a.
NCBI ID   WP_207522170.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain CX03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3588486..3600012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW38_RS15110 (JHW38_15110) - 3588586..3589863 (-) 1278 WP_207522167.1 M12 family metallo-peptidase -
  JHW38_RS15115 (JHW38_15115) - 3590273..3591325 (-) 1053 WP_207526384.1 YeiH family protein -
  JHW38_RS15120 (JHW38_15120) - 3591438..3592349 (+) 912 WP_207522168.1 LysR substrate-binding domain-containing protein -
  JHW38_RS15125 (JHW38_15125) - 3592541..3592879 (-) 339 WP_031371341.1 P-II family nitrogen regulator -
  JHW38_RS15130 (JHW38_15130) - 3593210..3593476 (+) 267 WP_207522169.1 accessory factor UbiK family protein -
  JHW38_RS15135 (JHW38_15135) comM 3593486..3595012 (+) 1527 WP_207522170.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JHW38_RS15140 (JHW38_15140) - 3595242..3596072 (+) 831 WP_207522171.1 AraC family transcriptional regulator -
  JHW38_RS15145 (JHW38_15145) - 3596389..3596544 (+) 156 WP_207522172.1 hypothetical protein -
  JHW38_RS15150 (JHW38_15150) - 3596788..3597801 (+) 1014 WP_207522173.1 alpha/beta hydrolase -
  JHW38_RS15155 (JHW38_15155) - 3598061..3599158 (-) 1098 WP_207522174.1 nitronate monooxygenase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54075.72 Da        Isoelectric Point: 8.4465

>NTDB_id=525854 JHW38_RS15135 WP_207522170.1 3593486..3595012(+) (comM) [Lysobacter enzymogenes strain CX03]
MNLALVHSRARTGVRAPAVRVEVHLAGGLPCMNIVGLPEAAVREAKDRVRAAIQSAQYEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQLPLPAFADCEFLGELGLTGELRAIDGVLPAALAAADAGRRLVVPAGNGSEAALASRVEARTARTL
SEVCSMLCERSQLPRAQAPAIVRAPEPDMRDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEDE
ALETAAIASVGGGGHGRALDPARWRQRPFRAPHHTASAVALVGGGADPRPGEISLAHHGVLFLDELPEWERRALEVLREP
LESGVVTVARAARSAEFPARFQLVAAMNPCPCGWAGDSSARCRCSADLIHRYRSRLSGPLLDRIDLHIEVPRLPPAALRP
DQPDGESSAAIRERVSAARRLQTERSGKHNARLDQADTNRHCRLSESDQALLERAVDALQLSARSMHRILRVARTIADLA
GCEAIATAHLSEAIGYRRADRDSATRAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=525854 JHW38_RS15135 WP_207522170.1 3593486..3595012(+) (comM) [Lysobacter enzymogenes strain CX03]
ATGAACCTGGCGCTCGTGCACAGCCGTGCGCGAACGGGGGTGCGTGCGCCGGCGGTACGCGTCGAAGTGCATCTGGCCGG
CGGCCTGCCGTGCATGAACATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAGGCCAAGGACCGGGTGCGCGCGGCGATCC
AGTCGGCGCAGTACGAATTCCCGCAGCGACGCATCACCGTCAACCTCGCGCCCGCCGATCTGCCCAAGGACGGCGGCCGC
TACGACCTGGCCATTGCGCTCGGCATCCTCGCCGCCAGCGGGCAGCTGCCGCTGCCGGCCTTCGCCGACTGCGAATTCCT
CGGCGAACTCGGCCTCACCGGCGAGCTGCGCGCGATCGACGGCGTGCTGCCGGCGGCGCTGGCCGCGGCCGACGCGGGGC
GCCGGCTGGTGGTGCCGGCCGGCAACGGCAGCGAAGCGGCGCTGGCCAGCCGGGTCGAGGCGCGCACCGCGCGCACGCTG
TCGGAAGTCTGCTCGATGCTGTGCGAACGCAGCCAGCTGCCGCGCGCGCAAGCGCCCGCGATCGTGCGCGCGCCCGAGCC
GGACATGCGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCGCTGGAGATCGCCGCGGCCGGCGGCCACCACCTGTTGC
TGATCGGCCCGCCCGGCTGCGGCAAGACCTTGCTCGCCTCGCGCTTGCCCGGCCTGCTGCCCGAAGCCAGCGAAGACGAA
GCGCTGGAAACCGCGGCGATCGCTTCGGTCGGCGGCGGCGGCCACGGCCGCGCGCTGGATCCGGCGCGCTGGCGCCAGCG
GCCGTTCCGCGCGCCGCACCACACCGCCAGCGCGGTCGCGCTGGTCGGCGGCGGCGCCGATCCGCGTCCGGGCGAAATCT
CGCTCGCGCACCACGGCGTGCTGTTCCTCGACGAGTTGCCCGAATGGGAGCGGCGCGCGTTGGAAGTGCTGCGCGAACCG
CTGGAATCGGGCGTGGTCACGGTCGCGCGCGCGGCGCGCAGCGCCGAGTTTCCGGCGCGCTTCCAGCTGGTCGCGGCGAT
GAATCCCTGCCCCTGCGGCTGGGCCGGCGACAGCAGCGCGCGCTGCCGCTGCAGCGCCGACCTCATCCATCGCTATCGTT
CGCGCCTGTCCGGCCCGTTGCTGGACCGCATCGACCTGCACATCGAGGTGCCGCGGCTGCCGCCGGCGGCGCTGCGGCCG
GACCAGCCCGACGGCGAGTCCAGCGCGGCGATCCGCGAACGCGTGAGCGCTGCGCGCCGCCTGCAGACCGAACGCAGCGG
CAAGCACAACGCGCGCCTGGACCAGGCCGACACCAACCGCCATTGCCGCTTGAGCGAATCCGATCAGGCCCTGCTGGAAC
GCGCGGTCGACGCGCTGCAATTGTCGGCGCGGTCGATGCACCGGATCCTGCGCGTGGCCCGCACCATCGCCGACCTCGCC
GGTTGCGAGGCCATCGCCACCGCGCATCTGAGCGAAGCCATCGGCTATCGGCGCGCGGACCGCGACAGCGCGACGCGGGC
GGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.672

99.016

0.541
  comM Vibrio campbellii strain DS40M4

53.678

99.016

0.531
  comM Glaesserella parasuis strain SC1401

52.344

100

0.528
  comM Haemophilus influenzae Rd KW20

52.684

99.016

0.522
  comM Legionella pneumophila str. Paris

49.9

98.622

0.492
  comM Legionella pneumophila strain ERS1305867

49.9

98.622

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.205

100

0.455