Detailed information
Bioinformatically predicted
Overview
| Name | cinA | Type | Machinery gene |
| Locus tag | JIO02_RS04705 | Genome accession | NZ_CP067365 |
| Coordinates | 954639..955880 (+) | Length | 413 a.a. |
| NCBI ID | WP_039139559.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain KF7 | ||
| Function | facilitate localization of RecA (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 949639..960880
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JIO02_RS04685 | yfmH | 950778..952070 (+) | 1293 | WP_039139548.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| JIO02_RS04690 | ymfI | 952070..952798 (+) | 729 | WP_193820314.1 | elongation factor P 5-aminopentanone reductase | - |
| JIO02_RS04695 | - | 952885..953820 (+) | 936 | WP_039139552.1 | helix-turn-helix domain-containing protein | - |
| JIO02_RS04700 | pgsA | 953817..954410 (+) | 594 | WP_005688184.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| JIO02_RS04705 | cinA | 954639..955880 (+) | 1242 | WP_039139559.1 | competence/damage-inducible protein A | Machinery gene |
| JIO02_RS04710 | recA | 955932..956984 (+) | 1053 | WP_005688187.1 | recombinase RecA | Machinery gene |
| JIO02_RS04715 | rny | 957403..958974 (+) | 1572 | WP_005684479.1 | ribonuclease Y | - |
| JIO02_RS04720 | - | 959063..959719 (-) | 657 | WP_100255568.1 | YigZ family protein | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 44469.20 Da Isoelectric Point: 8.3237
>NTDB_id=525641 JIO02_RS04705 WP_039139559.1 954639..955880(+) (cinA) [Lacticaseibacillus rhamnosus strain KF7]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDANAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWLEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAKVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDANAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWLEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAKVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
Nucleotide
Download Length: 1242 bp
>NTDB_id=525641 JIO02_RS04705 WP_039139559.1 954639..955880(+) (cinA) [Lacticaseibacillus rhamnosus strain KF7]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTAACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAGCAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCCAAGGCGCAATCGTGCTGGCCAATCGTGTTGGGTTGG
CGGTCGGCGCATGGCTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGATTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCAAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CTGGGGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCT
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCAAAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTAACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAGCAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCCAAGGCGCAATCGTGCTGGCCAATCGTGTTGGGTTGG
CGGTCGGCGCATGGCTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGATTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCAAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CTGGGGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCT
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCAAAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| cinA | Streptococcus mitis NCTC 12261 |
52.494 |
100 |
0.535 |
| cinA | Streptococcus mitis SK321 |
52.494 |
100 |
0.535 |
| cinA | Streptococcus pneumoniae TIGR4 |
52.019 |
100 |
0.53 |
| cinA | Streptococcus pneumoniae Rx1 |
51.544 |
100 |
0.525 |
| cinA | Streptococcus pneumoniae R6 |
51.544 |
100 |
0.525 |
| cinA | Streptococcus pneumoniae D39 |
51.306 |
100 |
0.523 |
| cinA | Streptococcus mutans UA159 |
51.691 |
100 |
0.518 |
| cinA | Bacillus subtilis subsp. subtilis str. 168 |
44.66 |
99.758 |
0.446 |
| cinA | Streptococcus suis isolate S10 |
41.799 |
91.525 |
0.383 |