Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJB06_RS00300 Genome accession   NZ_CP067342
Coordinates   60149..60634 (-) Length   161 a.a.
NCBI ID   WP_000157061.1    Uniprot ID   A0AAU7IP99
Organism   Escherichia coli strain ECJXMCRH7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 55149..65634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB06_RS00275 (JJB06_00265) - 55511..55666 (+) 156 WP_000074142.1 hypothetical protein -
  JJB06_RS00280 (JJB06_00270) - 55715..56170 (+) 456 Protein_56 hypothetical protein -
  JJB06_RS00285 (JJB06_00275) - 56206..57419 (+) 1214 WP_085950468.1 IS3-like element ISEc31 family transposase -
  JJB06_RS00290 (JJB06_00280) - 57571..57738 (+) 168 WP_001300931.1 hypothetical protein -
  JJB06_RS00295 (JJB06_00285) trbC 57774..60095 (-) 2322 WP_001164055.1 F-type conjugative transfer protein TrbC -
  JJB06_RS00300 (JJB06_00290) ssb 60149..60634 (-) 486 WP_000157061.1 single-stranded DNA-binding protein Machinery gene
  JJB06_RS00305 (JJB06_00295) - 61282..63663 (-) 2382 WP_001313395.1 glycoside hydrolase family 31 protein -
  JJB06_RS00310 (JJB06_00300) - 63678..64979 (-) 1302 WP_001329026.1 MFS transporter -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17685.62 Da        Isoelectric Point: 7.2017

>NTDB_id=525506 JJB06_RS00300 WP_000157061.1 60149..60634(-) (ssb) [Escherichia coli strain ECJXMCRH7]
MASKGINKVILIGYLGQDPDIRYMPNGGAVASIALATSETWRDKQTGEMREQTEWHRVVLFGKLAEVASEYLRKGAQVYI
DGQLRTRKWTDQTGQERYTTEVVVHTGGTMQMLGSRQNSAQGGRGQPQQPQQGRQFSGNSPSPGNTAMSGSFSDDDDSIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=525506 JJB06_RS00300 WP_000157061.1 60149..60634(-) (ssb) [Escherichia coli strain ECJXMCRH7]
ATGGCCTCTAAAGGTATTAACAAAGTTATTCTGATAGGGTATCTGGGTCAGGACCCGGATATTCGCTATATGCCAAACGG
CGGCGCTGTGGCCAGCATTGCGCTGGCCACCTCCGAAACCTGGCGGGACAAACAGACAGGGGAGATGCGGGAACAAACCG
AATGGCACCGCGTGGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGTGAATACCTGCGCAAAGGAGCTCAGGTGTACATC
GATGGTCAGCTGCGTACCCGAAAATGGACCGACCAGACCGGCCAGGAACGCTACACGACTGAAGTGGTGGTGCATACCGG
CGGTACCATGCAGATGCTGGGCTCCCGGCAGAATAGTGCACAGGGTGGCCGGGGACAGCCTCAACAACCACAACAGGGCA
GACAGTTTTCAGGTAATTCGCCATCTCCGGGCAATACCGCCATGTCCGGCAGTTTCAGCGACGATGACGACAGTATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.646
  ssb Glaesserella parasuis strain SC1401

52.632

94.41

0.497
  ssb Neisseria meningitidis MC58

41.477

100

0.453
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.453
  ssb Latilactobacillus sakei subsp. sakei 23K

32.402

100

0.36